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High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations
OBJECTIVE: Colorectal cancer (CRC) is a common type of malignant tumor of the digestive tract. Tumor mutation burden (TMB) is a potential prognostic indicator of numerous malignant tumors. This study investigated the prognostic value of TMB in CRC. METHODS: This study analyzed the clinical and somat...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9702324/ https://www.ncbi.nlm.nih.gov/pubmed/36452508 http://dx.doi.org/10.3389/fonc.2022.1015308 |
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author | Wang, Jianlei Song, Jianping Liu, Zeyang Zhang, Tingxiao Liu, Yanfeng |
author_facet | Wang, Jianlei Song, Jianping Liu, Zeyang Zhang, Tingxiao Liu, Yanfeng |
author_sort | Wang, Jianlei |
collection | PubMed |
description | OBJECTIVE: Colorectal cancer (CRC) is a common type of malignant tumor of the digestive tract. Tumor mutation burden (TMB) is a potential prognostic indicator of numerous malignant tumors. This study investigated the prognostic value of TMB in CRC. METHODS: This study analyzed the clinical and somatic mutation data of patients with CRC from the Memorial Sloan Kettering Cancer Center (MSKCC) and The Cancer Genome Atlas (TCGA) cohorts. The genetic landscape was visualized using the maftools package in R software. Survival curves were constructed using the Kaplan–Meier method, and Cox regression analysis was performed to confirm that TMB is an independent prognostic indicator. A nomogram was developed to construct the prognostic model, which was evaluated using the C-index, calibration curve, and decision curve analysis. RESULTS: In patients with CRC, APC mutations indicated longer overall survival (OS), whereas KRAS mutations indicated shorter OS. For all included patients, there was no significant difference in the OS between the TMB-high and TMB-low groups. For patients with KRAS mutations, the OS in the TMB-high group was longer than that in the TMB-low group. Cox regression analysis showed that TMB was an independent prognostic factor in CRC patients with KRAS mutations. This explains the good accuracy of the nomogram prognostic model using TMB and indicates its good prospect in clinical applications. CONCLUSIONS: A high TMB indicates better prognosis in CRC patients with KRAS mutations, thus confirming the value of TMB in clinical applications. |
format | Online Article Text |
id | pubmed-9702324 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97023242022-11-29 High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations Wang, Jianlei Song, Jianping Liu, Zeyang Zhang, Tingxiao Liu, Yanfeng Front Oncol Oncology OBJECTIVE: Colorectal cancer (CRC) is a common type of malignant tumor of the digestive tract. Tumor mutation burden (TMB) is a potential prognostic indicator of numerous malignant tumors. This study investigated the prognostic value of TMB in CRC. METHODS: This study analyzed the clinical and somatic mutation data of patients with CRC from the Memorial Sloan Kettering Cancer Center (MSKCC) and The Cancer Genome Atlas (TCGA) cohorts. The genetic landscape was visualized using the maftools package in R software. Survival curves were constructed using the Kaplan–Meier method, and Cox regression analysis was performed to confirm that TMB is an independent prognostic indicator. A nomogram was developed to construct the prognostic model, which was evaluated using the C-index, calibration curve, and decision curve analysis. RESULTS: In patients with CRC, APC mutations indicated longer overall survival (OS), whereas KRAS mutations indicated shorter OS. For all included patients, there was no significant difference in the OS between the TMB-high and TMB-low groups. For patients with KRAS mutations, the OS in the TMB-high group was longer than that in the TMB-low group. Cox regression analysis showed that TMB was an independent prognostic factor in CRC patients with KRAS mutations. This explains the good accuracy of the nomogram prognostic model using TMB and indicates its good prospect in clinical applications. CONCLUSIONS: A high TMB indicates better prognosis in CRC patients with KRAS mutations, thus confirming the value of TMB in clinical applications. Frontiers Media S.A. 2022-11-14 /pmc/articles/PMC9702324/ /pubmed/36452508 http://dx.doi.org/10.3389/fonc.2022.1015308 Text en Copyright © 2022 Wang, Song, Liu, Zhang and Liu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Wang, Jianlei Song, Jianping Liu, Zeyang Zhang, Tingxiao Liu, Yanfeng High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations |
title | High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations |
title_full | High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations |
title_fullStr | High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations |
title_full_unstemmed | High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations |
title_short | High tumor mutation burden indicates better prognosis in colorectal cancer patients with KRAS mutations |
title_sort | high tumor mutation burden indicates better prognosis in colorectal cancer patients with kras mutations |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9702324/ https://www.ncbi.nlm.nih.gov/pubmed/36452508 http://dx.doi.org/10.3389/fonc.2022.1015308 |
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