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GTDB-Tk v2: memory friendly classification with the genome taxonomy database

SUMMARY: The Genome Taxonomy Database (GTDB) and associated taxonomic classification toolkit (GTDB-Tk) have been widely adopted by the microbiology community. However, the growing size of the GTDB bacterial reference tree has resulted in GTDB-Tk requiring substantial amounts of memory (∼320 GB) whic...

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Detalles Bibliográficos
Autores principales: Chaumeil, Pierre-Alain, Mussig, Aaron J, Hugenholtz, Philip, Parks, Donovan H
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710552/
https://www.ncbi.nlm.nih.gov/pubmed/36218463
http://dx.doi.org/10.1093/bioinformatics/btac672