kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections

SUMMARY: When indexing large collections of short-read sequencing data, a common operation that has now been implemented in several tools (Sequence Bloom Trees and variants, BIGSI) is to construct a collection of Bloom filters, one per sample. Each Bloom filter is used to represent a set of k-mers w...

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Detalles Bibliográficos
Autores principales: Lemane, Téo, Medvedev, Paul, Chikhi, Rayan, Peterlongo, Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710589/
https://www.ncbi.nlm.nih.gov/pubmed/36699393
http://dx.doi.org/10.1093/bioadv/vbac029

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9710589/
https://www.ncbi.nlm.nih.gov/pubmed/36699393
http://dx.doi.org/10.1093/bioadv/vbac029

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