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Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity
Recent studies have shown that G protein coupled receptors (GPCRs) show selective and promiscuous coupling to different Gα protein subfamilies and yet the mechanisms of the range of coupling preferences remain unclear. Here, we use Molecular Dynamics (MD) simulations on ten GPCR:G protein complexes...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718833/ https://www.ncbi.nlm.nih.gov/pubmed/36460632 http://dx.doi.org/10.1038/s41467-022-34055-5 |
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author | Sandhu, Manbir Cho, Aaron Ma, Ning Mukhaleva, Elizaveta Namkung, Yoon Lee, Sangbae Ghosh, Soumadwip Lee, John H. Gloriam, David E. Laporte, Stéphane A. Babu, M. Madan Vaidehi, Nagarajan |
author_facet | Sandhu, Manbir Cho, Aaron Ma, Ning Mukhaleva, Elizaveta Namkung, Yoon Lee, Sangbae Ghosh, Soumadwip Lee, John H. Gloriam, David E. Laporte, Stéphane A. Babu, M. Madan Vaidehi, Nagarajan |
author_sort | Sandhu, Manbir |
collection | PubMed |
description | Recent studies have shown that G protein coupled receptors (GPCRs) show selective and promiscuous coupling to different Gα protein subfamilies and yet the mechanisms of the range of coupling preferences remain unclear. Here, we use Molecular Dynamics (MD) simulations on ten GPCR:G protein complexes and show that the location (spatial) and duration (temporal) of intermolecular contacts at the GPCR:Gα protein interface play a critical role in how GPCRs selectively interact with G proteins. We identify that some GPCR:G protein interface contacts are common across Gα subfamilies and others specific to Gα subfamilies. Using large scale data analysis techniques on the MD simulation snapshots we derive a spatio-temporal code for contacts that confer G protein selective coupling and validated these contacts using G protein activation BRET assays. Our results demonstrate that promiscuous GPCRs show persistent sampling of the common contacts more than G protein specific contacts. These findings suggest that GPCRs maintain contact with G proteins through a common central interface, while the selectivity comes from G protein specific contacts at the periphery of the interface. |
format | Online Article Text |
id | pubmed-9718833 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-97188332022-12-04 Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity Sandhu, Manbir Cho, Aaron Ma, Ning Mukhaleva, Elizaveta Namkung, Yoon Lee, Sangbae Ghosh, Soumadwip Lee, John H. Gloriam, David E. Laporte, Stéphane A. Babu, M. Madan Vaidehi, Nagarajan Nat Commun Article Recent studies have shown that G protein coupled receptors (GPCRs) show selective and promiscuous coupling to different Gα protein subfamilies and yet the mechanisms of the range of coupling preferences remain unclear. Here, we use Molecular Dynamics (MD) simulations on ten GPCR:G protein complexes and show that the location (spatial) and duration (temporal) of intermolecular contacts at the GPCR:Gα protein interface play a critical role in how GPCRs selectively interact with G proteins. We identify that some GPCR:G protein interface contacts are common across Gα subfamilies and others specific to Gα subfamilies. Using large scale data analysis techniques on the MD simulation snapshots we derive a spatio-temporal code for contacts that confer G protein selective coupling and validated these contacts using G protein activation BRET assays. Our results demonstrate that promiscuous GPCRs show persistent sampling of the common contacts more than G protein specific contacts. These findings suggest that GPCRs maintain contact with G proteins through a common central interface, while the selectivity comes from G protein specific contacts at the periphery of the interface. Nature Publishing Group UK 2022-12-02 /pmc/articles/PMC9718833/ /pubmed/36460632 http://dx.doi.org/10.1038/s41467-022-34055-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Sandhu, Manbir Cho, Aaron Ma, Ning Mukhaleva, Elizaveta Namkung, Yoon Lee, Sangbae Ghosh, Soumadwip Lee, John H. Gloriam, David E. Laporte, Stéphane A. Babu, M. Madan Vaidehi, Nagarajan Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity |
title | Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity |
title_full | Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity |
title_fullStr | Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity |
title_full_unstemmed | Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity |
title_short | Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity |
title_sort | dynamic spatiotemporal determinants modulate gpcr:g protein coupling selectivity and promiscuity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718833/ https://www.ncbi.nlm.nih.gov/pubmed/36460632 http://dx.doi.org/10.1038/s41467-022-34055-5 |
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