Cargando…
Haplotype assignment of longitudinal viral deep sequencing data using covariation of variant frequencies
Longitudinal deep sequencing of viruses can provide detailed information about intra-host evolutionary dynamics including how viruses interact with and transmit between hosts. Many analyses require haplotype reconstruction, identifying which variants are co-located on the same genomic element. Most...
Autores principales: | Venturini, Cristina, Pang, Juanita, Tamuri, Asif U, Roy, Sunando, Atkinson, Claire, Griffiths, Paul, Breuer, Judith, Goldstein, Richard A |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9719071/ https://www.ncbi.nlm.nih.gov/pubmed/36478783 http://dx.doi.org/10.1093/ve/veac093 |
Ejemplares similares
-
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination
por: Cudini, Juliana, et al.
Publicado: (2019) -
Mixed cytomegalovirus genotypes in HIV-positive mothers show compartmentalization and distinct patterns of transmission to infants
por: Pang, Juanita, et al.
Publicado: (2020) -
On the effective depth of viral sequence data
por: Illingworth, Christopher J R, et al.
Publicado: (2017) -
PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
por: Voorrips, Roeland E., et al.
Publicado: (2016) -
Genomic and geographical structure of human cytomegalovirus
por: Charles, Oscar J., et al.
Publicado: (2023)