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A new family of CRISPR‐type V nucleases with C‐rich PAM recognition

Most CRISPR‐type V nucleases are stimulated to cleave double‐stranded (ds) DNA targets by a T‐rich PAM, which restricts their targeting range. Here, we identify and characterize a new family of type V RNA‐guided nuclease, Cas12l, that exclusively recognizes a C‐rich (5'‐CCY‐3′) PAM. The organiz...

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Autores principales: Urbaitis, Tomas, Gasiunas, Giedrius, Young, Joshua K, Hou, Zhenglin, Paulraj, Sushmitha, Godliauskaite, Egle, Juskeviciene, Mantvyda M, Stitilyte, Migle, Jasnauskaite, Monika, Mabuchi, Megumu, Robb, G Brett, Siksnys, Virginijus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9724661/
https://www.ncbi.nlm.nih.gov/pubmed/36268581
http://dx.doi.org/10.15252/embr.202255481
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author Urbaitis, Tomas
Gasiunas, Giedrius
Young, Joshua K
Hou, Zhenglin
Paulraj, Sushmitha
Godliauskaite, Egle
Juskeviciene, Mantvyda M
Stitilyte, Migle
Jasnauskaite, Monika
Mabuchi, Megumu
Robb, G Brett
Siksnys, Virginijus
author_facet Urbaitis, Tomas
Gasiunas, Giedrius
Young, Joshua K
Hou, Zhenglin
Paulraj, Sushmitha
Godliauskaite, Egle
Juskeviciene, Mantvyda M
Stitilyte, Migle
Jasnauskaite, Monika
Mabuchi, Megumu
Robb, G Brett
Siksnys, Virginijus
author_sort Urbaitis, Tomas
collection PubMed
description Most CRISPR‐type V nucleases are stimulated to cleave double‐stranded (ds) DNA targets by a T‐rich PAM, which restricts their targeting range. Here, we identify and characterize a new family of type V RNA‐guided nuclease, Cas12l, that exclusively recognizes a C‐rich (5'‐CCY‐3′) PAM. The organization of genes within its CRISPR locus is similar to type II‐B CRISPR‐Cas9 systems, but both sequence analysis and functional studies establish it as a new family of type V effector. Biochemical experiments show that Cas12l nucleases function optimally between 37 and 52°C, depending on the ortholog, and preferentially cut supercoiled DNA. Like other type V nucleases, it exhibits collateral nonspecific ssDNA and ssRNA cleavage activity that is triggered by ssDNA or dsDNA target recognition. Finally, we show that one family member, Asp2Cas12l, functions in a heterologous cellular environment, altogether, suggesting that this new group of CRISPR‐associated nucleases may be harnessed as genome editing reagents.
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spelling pubmed-97246612022-12-08 A new family of CRISPR‐type V nucleases with C‐rich PAM recognition Urbaitis, Tomas Gasiunas, Giedrius Young, Joshua K Hou, Zhenglin Paulraj, Sushmitha Godliauskaite, Egle Juskeviciene, Mantvyda M Stitilyte, Migle Jasnauskaite, Monika Mabuchi, Megumu Robb, G Brett Siksnys, Virginijus EMBO Rep Articles Most CRISPR‐type V nucleases are stimulated to cleave double‐stranded (ds) DNA targets by a T‐rich PAM, which restricts their targeting range. Here, we identify and characterize a new family of type V RNA‐guided nuclease, Cas12l, that exclusively recognizes a C‐rich (5'‐CCY‐3′) PAM. The organization of genes within its CRISPR locus is similar to type II‐B CRISPR‐Cas9 systems, but both sequence analysis and functional studies establish it as a new family of type V effector. Biochemical experiments show that Cas12l nucleases function optimally between 37 and 52°C, depending on the ortholog, and preferentially cut supercoiled DNA. Like other type V nucleases, it exhibits collateral nonspecific ssDNA and ssRNA cleavage activity that is triggered by ssDNA or dsDNA target recognition. Finally, we show that one family member, Asp2Cas12l, functions in a heterologous cellular environment, altogether, suggesting that this new group of CRISPR‐associated nucleases may be harnessed as genome editing reagents. John Wiley and Sons Inc. 2022-10-21 /pmc/articles/PMC9724661/ /pubmed/36268581 http://dx.doi.org/10.15252/embr.202255481 Text en © 2022 The Authors. Published under the terms of the CC BY 4.0 license. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Urbaitis, Tomas
Gasiunas, Giedrius
Young, Joshua K
Hou, Zhenglin
Paulraj, Sushmitha
Godliauskaite, Egle
Juskeviciene, Mantvyda M
Stitilyte, Migle
Jasnauskaite, Monika
Mabuchi, Megumu
Robb, G Brett
Siksnys, Virginijus
A new family of CRISPR‐type V nucleases with C‐rich PAM recognition
title A new family of CRISPR‐type V nucleases with C‐rich PAM recognition
title_full A new family of CRISPR‐type V nucleases with C‐rich PAM recognition
title_fullStr A new family of CRISPR‐type V nucleases with C‐rich PAM recognition
title_full_unstemmed A new family of CRISPR‐type V nucleases with C‐rich PAM recognition
title_short A new family of CRISPR‐type V nucleases with C‐rich PAM recognition
title_sort new family of crispr‐type v nucleases with c‐rich pam recognition
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9724661/
https://www.ncbi.nlm.nih.gov/pubmed/36268581
http://dx.doi.org/10.15252/embr.202255481
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