EndHiC: assemble large contigs into chromosome-level scaffolds using the Hi-C links from contig ends

BACKGROUND: The application of PacBio HiFi and ultra-long ONT reads have enabled huge progress in the contig-level assembly, but it is still challenging to assemble large contigs into chromosomes with available Hi-C scaffolding tools, which count Hi-C links between contigs using the whole or a large...

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Detalles Bibliográficos
Autores principales: Wang, Sen, Wang, Hengchao, Jiang, Fan, Wang, Anqi, Liu, Hangwei, Zhao, Hanbo, Yang, Boyuan, Xu, Dong, Zhang, Yan, Fan, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9730666/
https://www.ncbi.nlm.nih.gov/pubmed/36482318
http://dx.doi.org/10.1186/s12859-022-05087-x

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