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Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma
BACKGROUND: Lactic acid, as a product of glycolysis, increases tumor cell migration and the invasion of tumor cells in the tumor microenvironment. Besides this, lactic acid promotes the expression of programmed death-1 expression (PD-1) in regulatory T cells, which could cause the failure of PD-1 bl...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732022/ https://www.ncbi.nlm.nih.gov/pubmed/36505423 http://dx.doi.org/10.3389/fimmu.2022.1024925 |
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author | Shang, Shipeng Wang, Mi-zhou Xing, Zhiyuan He, Ningning Li, Shangyong |
author_facet | Shang, Shipeng Wang, Mi-zhou Xing, Zhiyuan He, Ningning Li, Shangyong |
author_sort | Shang, Shipeng |
collection | PubMed |
description | BACKGROUND: Lactic acid, as a product of glycolysis, increases tumor cell migration and the invasion of tumor cells in the tumor microenvironment. Besides this, lactic acid promotes the expression of programmed death-1 expression (PD-1) in regulatory T cells, which could cause the failure of PD-1 blockade therapy. However, the implications of lactic acid in the tumor microenvironment of lung adenocarcinoma (LUAD) remain largely unclear. METHODS: We performed unsupervised consensus clustering to identify lactic-associated subtypes using expression profile of lactate regulators in LUAD. Differentially expressed genes (DEGs) associated with lactic-associated subtypes was used to construct lactate signature (LaSig) using LASSO regression algorithm. Immune infiltration analysis was conducted by ESTIMATER and drug sensitivity was estimated by R package called “pRRophetic”. The difference between two groups was calculated using Wilcox rank sum test and correlation analysis was calculated using Pearson correlation coefficient. RESULTS: In this study, we evaluated DNA methylation and the mutation frequency of lactate regulators and found lactate regulators showed low mutation frequency in the TCGA-LUAD cohort, except TP53. At the RNA level, the expression level of lactate regulators was significantly associated with the immune cell component. In particular, expression of LDHA was positively correlated with CD4 T cell, CD8 T cell, M1 macrophages, and the enrichment score of multiple immune pathways. Two clusters were defined using the gene expression level of lactate regulators, and LDHA was significantly upregulated in cluster 1 with poor overall survival. A lactate signature (LaSig) had a robust performance in predicting the survival rate and immunotherapy response of LUAD patients. Moreover, patients in the high LaSig group may be more likely to benefit from these drugs (Cisplatin, Erlotinib, Gemcitabine, and Vinblastine) than those in the low LaSig group. CONCLUSION: In summary, our study explores the role of lactate regulators in guiding the clinical treatment of lung adenocarcinoma and provides additional help to supplement traditional molecular subtypes. |
format | Online Article Text |
id | pubmed-9732022 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-97320222022-12-10 Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma Shang, Shipeng Wang, Mi-zhou Xing, Zhiyuan He, Ningning Li, Shangyong Front Immunol Immunology BACKGROUND: Lactic acid, as a product of glycolysis, increases tumor cell migration and the invasion of tumor cells in the tumor microenvironment. Besides this, lactic acid promotes the expression of programmed death-1 expression (PD-1) in regulatory T cells, which could cause the failure of PD-1 blockade therapy. However, the implications of lactic acid in the tumor microenvironment of lung adenocarcinoma (LUAD) remain largely unclear. METHODS: We performed unsupervised consensus clustering to identify lactic-associated subtypes using expression profile of lactate regulators in LUAD. Differentially expressed genes (DEGs) associated with lactic-associated subtypes was used to construct lactate signature (LaSig) using LASSO regression algorithm. Immune infiltration analysis was conducted by ESTIMATER and drug sensitivity was estimated by R package called “pRRophetic”. The difference between two groups was calculated using Wilcox rank sum test and correlation analysis was calculated using Pearson correlation coefficient. RESULTS: In this study, we evaluated DNA methylation and the mutation frequency of lactate regulators and found lactate regulators showed low mutation frequency in the TCGA-LUAD cohort, except TP53. At the RNA level, the expression level of lactate regulators was significantly associated with the immune cell component. In particular, expression of LDHA was positively correlated with CD4 T cell, CD8 T cell, M1 macrophages, and the enrichment score of multiple immune pathways. Two clusters were defined using the gene expression level of lactate regulators, and LDHA was significantly upregulated in cluster 1 with poor overall survival. A lactate signature (LaSig) had a robust performance in predicting the survival rate and immunotherapy response of LUAD patients. Moreover, patients in the high LaSig group may be more likely to benefit from these drugs (Cisplatin, Erlotinib, Gemcitabine, and Vinblastine) than those in the low LaSig group. CONCLUSION: In summary, our study explores the role of lactate regulators in guiding the clinical treatment of lung adenocarcinoma and provides additional help to supplement traditional molecular subtypes. Frontiers Media S.A. 2022-11-25 /pmc/articles/PMC9732022/ /pubmed/36505423 http://dx.doi.org/10.3389/fimmu.2022.1024925 Text en Copyright © 2022 Shang, Wang, Xing, He and Li https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Shang, Shipeng Wang, Mi-zhou Xing, Zhiyuan He, Ningning Li, Shangyong Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
title | Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
title_full | Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
title_fullStr | Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
title_full_unstemmed | Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
title_short | Lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
title_sort | lactate regulators contribute to tumor microenvironment and predict prognosis in lung adenocarcinoma |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9732022/ https://www.ncbi.nlm.nih.gov/pubmed/36505423 http://dx.doi.org/10.3389/fimmu.2022.1024925 |
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