Cargando…

Structures of RNA ligase RtcB in complexes with divalent cations and GTP

Pyrococcus horikoshii (Pho) RtcB exemplifies a family of binuclear transition metal- and GTP-dependent RNA ligases that join 3′-phosphate and 5′-OH ends via RtcB-(histidinyl-N)–GMP and RNA(3')pp(5')G intermediates. We find that guanylylation of PhoRtcB is optimal with manganese and less ef...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jacewicz, Agata, Dantuluri, Swathi, Shuman, Stewart
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9745838/ https://www.ncbi.nlm.nih.gov/pubmed/36130078 http://dx.doi.org/10.1261/rna.079327.122

Ejemplares similares

Insights into the structure and function of the RNA ligase RtcB
por: Moncan, Matthieu, et al.
Publicado: (2023)

Structure of 3′-PO(4)/5′-OH RNA ligase RtcB in complex with a 5′-OH oligonucleotide
por: Banerjee, Ankan, et al.
Publicado: (2021)

2′-Phosphate cyclase activity of RtcA: a potential rationale for the operon organization of RtcA with an RNA repair ligase RtcB in Escherichia coli and other bacterial taxa
por: Das, Ushati, et al.
Publicado: (2013)

The sequential 2′,3′-cyclic phosphodiesterase and 3′-phosphate/5′-OH ligation steps of the RtcB RNA splicing pathway are GTP-dependent
por: Chakravarty, Anupam K., et al.
Publicado: (2012)

Coevolution of RtcB and Archease created a multiple-turnover RNA ligase
por: Desai, Kevin K., et al.
Publicado: (2015)

The RNA ligase RtcB reverses MazF-induced ribosome heterogeneity in Escherichia coli
por: Temmel, Hannes, et al.
Publicado: (2017)

Putative RNA Ligase RtcB Affects the Switch between T6SS and T3SS in Pseudomonas aeruginosa
por: Dadashi, Maryam, et al.
Publicado: (2021)

A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation
por: Desai, Kevin K., et al.
Publicado: (2014)

Sequential rescue and repair of stalled and damaged ribosome by bacterial PrfH and RtcB
por: Tian, Yannan, et al.
Publicado: (2022)

Stress-induced tyrosine phosphorylation of RtcB modulates IRE1 activity and signaling outputs
por: Papaioannou, Alexandra, et al.
Publicado: (2022)

Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase
por: Remus, Barbara S., et al.
Publicado: (2017)

RtcB2-PrfH Operon Protects E. coli ATCC25922 Strain from Colicin E3 Toxin
por: Maviza, Tinashe P., et al.
Publicado: (2022)

Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP•Mg(2+) and 5′-OH oligonucleotide and a product complex with GDP•Mg(2+) and 5′-PO(4) oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition
por: Das, Ushati, et al.
Publicado: (2014)

RTCB Complex Regulates Stress-Induced tRNA Cleavage
por: Akiyama, Yasutoshi, et al.
Publicado: (2022)

NMR solution structures of Runella slithyformis RNA 2′-phosphotransferase Tpt1 provide insights into NAD(+) binding and specificity
por: Alphonse, Sébastien, et al.
Publicado: (2021)

High-throughput mapping of RNA solvent accessibility at the single-nucleotide resolution by RtcB ligation between a fixed 5′-OH-end linker and unique 3′-P-end fragments from hydroxyl radical cleavage
por: Solayman, Md, et al.
Publicado: (2022)

Structure and mechanism of E. coli RNA 2′,3′-cyclic phosphodiesterase
por: Remus, Barbara S., et al.
Publicado: (2014)

Learning WebRTC: develop interactive real-time communication applications with WebRTC
por: Ristic, Dan
Publicado: (2015)

Atomic structures of the RNA end-healing 5′-OH kinase and 2′,3′-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor
por: Banerjee, Ankan, et al.
Publicado: (2019)

Crystal structure, mutational analysis and RNA-dependent ATPase activity of the yeast DEAD-box pre-mRNA splicing factor Prp28
por: Jacewicz, Agata, et al.
Publicado: (2014)

Activation of Deoxyribonucleases by Divalent Cations
por: Desreux, V., et al.
Publicado: (1962)

Activity and substrate specificity of Candida, Aspergillus, and Coccidioides Tpt1: essential tRNA splicing enzymes and potential antifungal targets
por: Dantuluri, Swathi, et al.
Publicado: (2021)

Protein Aggregation Patterns Inform about Breast Cancer Response to Antiestrogens and Reveal the RNA Ligase RTCB as Mediator of Acquired Tamoxifen Resistance
por: Direito, Inês, et al.
Publicado: (2021)

Substrate analogs that trap the 2′-phospho-ADP-ribosylated RNA intermediate of the Tpt1 (tRNA 2′-phosphotransferase) reaction pathway
por: Dantuluri, Swathi, et al.
Publicado: (2020)

Stabilization of Curcumin by Complexation with Divalent Cations in Glycerol/Water System
por: Zebib, Bachar, et al.
Publicado: (2010)

The RNA repair proteins RtcAB regulate transcription activator RtcR via its CRISPR-associated Rossmann fold domain
por: Kotta-Loizou, Ioly, et al.
Publicado: (2022)

Structural Rearrangement of Dps-DNA Complex Caused by Divalent Mg and Fe Cations
por: Dadinova, Liubov, et al.
Publicado: (2021)

Real-time communication with WebRTC
por: Loreto, Salvatore, et al.
Publicado: (2014)

DNA(3′)pp(5′)G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition
por: Chauleau, Mathieu, et al.
Publicado: (2015)

Divalent cation block and competition between divalent and monovalent cations in the large-conductance K+ channel from Chara australis
Publicado: (1992)

WebRTC integrator's guide : successfully build your very own scalable WebRTC infrastructure quickly and efficiently
por: Altanai
Publicado: (2014)

Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs
por: Jacewicz, Agata, et al.
Publicado: (2015)

The Effect of Divalent Cation Depletion on Phagocytosis of Staphylococci
por: Bryant, Richard E.
Publicado: (1969)

Divalent cation affinity sites in Paramecium aurelia
Publicado: (1976)

Structure of mycobacterial 3′-to-5′ RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases
por: Ejaz, Anam, et al.
Publicado: (2018)

Different divalent cation requirements for binding IgM complexes to lymphocytes and macrophages
Publicado: (1980)

Structure-guided DNA–DNA attraction mediated by divalent cations
por: Srivastava, Amit, et al.
Publicado: (2020)

Structure and two-metal mechanism of fungal tRNA ligase
por: Banerjee, Ankan, et al.
Publicado: (2019)

Modulation of potassium channel gating by external divalent cations
Publicado: (1994)

Stimulation and inhibition of secretion in Paramecium: role of divalent cations
Publicado: (1983)

Cannot write session to /tmp/vufind_sessions/sess_bjvsbr8eiu6tsbu4kq68cmah6o