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Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse

Twitcher (Twi) is a neurological Krabbe disease (KD, or globoid cell leukodystrophy) spontaneous mutant line in mice. The genome of the Twi mouse presents a single nucleotide polymorphism (SNP), leading to an enzymatically inactive galactosylceramidase (Galc) protein that causes KD. In this context,...

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Autores principales: Carpi, Sara, Del Grosso, Ambra, De Sarlo, Miriam, Colagiorgio, Laura, Scaccini, Luca, Tonazzini, Ilaria, Parlanti, Gabriele, Cecchini, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9776230/
https://www.ncbi.nlm.nih.gov/pubmed/36551902
http://dx.doi.org/10.3390/biomedicines10123146
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author Carpi, Sara
Del Grosso, Ambra
De Sarlo, Miriam
Colagiorgio, Laura
Scaccini, Luca
Tonazzini, Ilaria
Parlanti, Gabriele
Cecchini, Marco
author_facet Carpi, Sara
Del Grosso, Ambra
De Sarlo, Miriam
Colagiorgio, Laura
Scaccini, Luca
Tonazzini, Ilaria
Parlanti, Gabriele
Cecchini, Marco
author_sort Carpi, Sara
collection PubMed
description Twitcher (Twi) is a neurological Krabbe disease (KD, or globoid cell leukodystrophy) spontaneous mutant line in mice. The genome of the Twi mouse presents a single nucleotide polymorphism (SNP), leading to an enzymatically inactive galactosylceramidase (Galc) protein that causes KD. In this context, mouse Twi genotyping is an essential step in KD research. To date, the genotyping method used is labor-intensive and often has ambiguous results. Here, we evaluated a novel protocol for the genotype determination of Galc mutation status in Twi mice based on the allele-discrimination real-time polymerase chain reaction (PCR). Here, DNA is extracted from Twi mice (n = 20, pilot study; n = 120, verification study) and control group (n = 10, pilot study; n = 30 verification study) and assessed by allele-discrimination real-time PCR to detect SNP c.355G>A. Using the allele-discrimination PCR, all of the samples are identified correctly with the genotype GG (wild-type, WT), GA (heterozygote, HET), or AA (homozygote, HOM) using the first analysis and no animals are not genotyped. We demonstrated that this novel method can be used to distinguish KD timely, accurately, and without ambiguity in HOM, WT, and HET animals. This protocol represents a great opportunity to increase accuracy and speed in KD research.
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spelling pubmed-97762302022-12-23 Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse Carpi, Sara Del Grosso, Ambra De Sarlo, Miriam Colagiorgio, Laura Scaccini, Luca Tonazzini, Ilaria Parlanti, Gabriele Cecchini, Marco Biomedicines Article Twitcher (Twi) is a neurological Krabbe disease (KD, or globoid cell leukodystrophy) spontaneous mutant line in mice. The genome of the Twi mouse presents a single nucleotide polymorphism (SNP), leading to an enzymatically inactive galactosylceramidase (Galc) protein that causes KD. In this context, mouse Twi genotyping is an essential step in KD research. To date, the genotyping method used is labor-intensive and often has ambiguous results. Here, we evaluated a novel protocol for the genotype determination of Galc mutation status in Twi mice based on the allele-discrimination real-time polymerase chain reaction (PCR). Here, DNA is extracted from Twi mice (n = 20, pilot study; n = 120, verification study) and control group (n = 10, pilot study; n = 30 verification study) and assessed by allele-discrimination real-time PCR to detect SNP c.355G>A. Using the allele-discrimination PCR, all of the samples are identified correctly with the genotype GG (wild-type, WT), GA (heterozygote, HET), or AA (homozygote, HOM) using the first analysis and no animals are not genotyped. We demonstrated that this novel method can be used to distinguish KD timely, accurately, and without ambiguity in HOM, WT, and HET animals. This protocol represents a great opportunity to increase accuracy and speed in KD research. MDPI 2022-12-06 /pmc/articles/PMC9776230/ /pubmed/36551902 http://dx.doi.org/10.3390/biomedicines10123146 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Carpi, Sara
Del Grosso, Ambra
De Sarlo, Miriam
Colagiorgio, Laura
Scaccini, Luca
Tonazzini, Ilaria
Parlanti, Gabriele
Cecchini, Marco
Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse
title Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse
title_full Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse
title_fullStr Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse
title_full_unstemmed Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse
title_short Reliable and Fast Genotyping Protocol for Galactosylceramidase (Galc) in the Twitcher (Twi) Mouse
title_sort reliable and fast genotyping protocol for galactosylceramidase (galc) in the twitcher (twi) mouse
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9776230/
https://www.ncbi.nlm.nih.gov/pubmed/36551902
http://dx.doi.org/10.3390/biomedicines10123146
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