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Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast

Ethyl acetate is an important flavor element that is a vital component of baijiu. To date, the transcription factors that can help identify the molecular mechanisms involved in the synthesis of ethyl acetate have not been studied. In the present study, we sequenced and assembled the Wickerhamomyces...

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Autores principales: Ni, Bingqian, Li, Weiwei, Ifrah, Kiren, Du, Binghao, Xu, Youqiang, Zhang, Chengnan, Li, Xiuting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9777979/
https://www.ncbi.nlm.nih.gov/pubmed/36553608
http://dx.doi.org/10.3390/genes13122341
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author Ni, Bingqian
Li, Weiwei
Ifrah, Kiren
Du, Binghao
Xu, Youqiang
Zhang, Chengnan
Li, Xiuting
author_facet Ni, Bingqian
Li, Weiwei
Ifrah, Kiren
Du, Binghao
Xu, Youqiang
Zhang, Chengnan
Li, Xiuting
author_sort Ni, Bingqian
collection PubMed
description Ethyl acetate is an important flavor element that is a vital component of baijiu. To date, the transcription factors that can help identify the molecular mechanisms involved in the synthesis of ethyl acetate have not been studied. In the present study, we sequenced and assembled the Wickerhamomyces anomalus strain YF1503 transcriptomes to identify transcription factors. We identified 307 transcription factors in YF1503 using high-throughput RNA sequencing. Some transcription factors, such as C2H2, bHLH, MYB, and bZIP, were up-regulated, and these might play a role in ethyl acetate synthesis. According to the trend of ethyl acetate content, heat map results and STEM, twelve genes were selected for verification of expression levels using quantitative real-time PCR. This dynamic transcriptome analysis presents fundamental information on the transcription factors and pathways that are involved in the synthesis of ethyl acetate in aroma-producing yeast. Of significant interest is the discovery of the roles of various transcription factor genes in the synthesis of ethyl acetate.
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spelling pubmed-97779792022-12-23 Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast Ni, Bingqian Li, Weiwei Ifrah, Kiren Du, Binghao Xu, Youqiang Zhang, Chengnan Li, Xiuting Genes (Basel) Article Ethyl acetate is an important flavor element that is a vital component of baijiu. To date, the transcription factors that can help identify the molecular mechanisms involved in the synthesis of ethyl acetate have not been studied. In the present study, we sequenced and assembled the Wickerhamomyces anomalus strain YF1503 transcriptomes to identify transcription factors. We identified 307 transcription factors in YF1503 using high-throughput RNA sequencing. Some transcription factors, such as C2H2, bHLH, MYB, and bZIP, were up-regulated, and these might play a role in ethyl acetate synthesis. According to the trend of ethyl acetate content, heat map results and STEM, twelve genes were selected for verification of expression levels using quantitative real-time PCR. This dynamic transcriptome analysis presents fundamental information on the transcription factors and pathways that are involved in the synthesis of ethyl acetate in aroma-producing yeast. Of significant interest is the discovery of the roles of various transcription factor genes in the synthesis of ethyl acetate. MDPI 2022-12-11 /pmc/articles/PMC9777979/ /pubmed/36553608 http://dx.doi.org/10.3390/genes13122341 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ni, Bingqian
Li, Weiwei
Ifrah, Kiren
Du, Binghao
Xu, Youqiang
Zhang, Chengnan
Li, Xiuting
Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast
title Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast
title_full Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast
title_fullStr Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast
title_full_unstemmed Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast
title_short Dynamic Transcriptome Analysis Reveals Transcription Factors Involved in the Synthesis of Ethyl Acetate in Aroma-Producing Yeast
title_sort dynamic transcriptome analysis reveals transcription factors involved in the synthesis of ethyl acetate in aroma-producing yeast
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9777979/
https://www.ncbi.nlm.nih.gov/pubmed/36553608
http://dx.doi.org/10.3390/genes13122341
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