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Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy

Green or purple lettuce varieties produce many secondary metabolites, such as chlorophylls, carotenoids, anthocyanins, flavonoids, and phenolic compounds, which is an emergent search in the field of biomolecule research. The main objective of this study was to use multivariate and machine learning a...

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Autores principales: Falcioni, Renan, Moriwaki, Thaise, Gibin, Mariana Sversut, Vollmann, Alessandra, Pattaro, Mariana Carmona, Giacomelli, Marina Ellen, Sato, Francielle, Nanni, Marcos Rafael, Antunes, Werner Camargos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9783279/
https://www.ncbi.nlm.nih.gov/pubmed/36559526
http://dx.doi.org/10.3390/plants11243413
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author Falcioni, Renan
Moriwaki, Thaise
Gibin, Mariana Sversut
Vollmann, Alessandra
Pattaro, Mariana Carmona
Giacomelli, Marina Ellen
Sato, Francielle
Nanni, Marcos Rafael
Antunes, Werner Camargos
author_facet Falcioni, Renan
Moriwaki, Thaise
Gibin, Mariana Sversut
Vollmann, Alessandra
Pattaro, Mariana Carmona
Giacomelli, Marina Ellen
Sato, Francielle
Nanni, Marcos Rafael
Antunes, Werner Camargos
author_sort Falcioni, Renan
collection PubMed
description Green or purple lettuce varieties produce many secondary metabolites, such as chlorophylls, carotenoids, anthocyanins, flavonoids, and phenolic compounds, which is an emergent search in the field of biomolecule research. The main objective of this study was to use multivariate and machine learning algorithms on Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR-FTIR)-based spectra to classify, predict, and categorize chemometric attributes. The cluster heatmap showed the highest efficiency in grouping similar lettuce varieties based on pigment profiles. The relationship among pigments was more significant than the absolute contents. Other results allow classification based on ATR-FTIR fingerprints of inflections associated with structural and chemical components present in lettuce, obtaining high accuracy and precision (>97%) by using principal component analysis and discriminant analysis (PCA-LDA)-associated linear LDA and SVM machine learning algorithms. In addition, PLSR models were capable of predicting Chla, Chlb, Chla+b, Car, AnC, Flv, and Phe contents, with R(2)(P) and RPD(P) values considered very good (0.81–0.88) for Car, Anc, and Flv and excellent (0.91–0.93) for Phe. According to the RPD(P) metric, the models were considered excellent (>2.10) for all variables estimated. Thus, this research shows the potential of machine learning solutions for ATR-FTIR spectroscopy analysis to classify, estimate, and characterize the biomolecules associated with secondary metabolites in lettuce.
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spelling pubmed-97832792022-12-24 Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy Falcioni, Renan Moriwaki, Thaise Gibin, Mariana Sversut Vollmann, Alessandra Pattaro, Mariana Carmona Giacomelli, Marina Ellen Sato, Francielle Nanni, Marcos Rafael Antunes, Werner Camargos Plants (Basel) Article Green or purple lettuce varieties produce many secondary metabolites, such as chlorophylls, carotenoids, anthocyanins, flavonoids, and phenolic compounds, which is an emergent search in the field of biomolecule research. The main objective of this study was to use multivariate and machine learning algorithms on Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR-FTIR)-based spectra to classify, predict, and categorize chemometric attributes. The cluster heatmap showed the highest efficiency in grouping similar lettuce varieties based on pigment profiles. The relationship among pigments was more significant than the absolute contents. Other results allow classification based on ATR-FTIR fingerprints of inflections associated with structural and chemical components present in lettuce, obtaining high accuracy and precision (>97%) by using principal component analysis and discriminant analysis (PCA-LDA)-associated linear LDA and SVM machine learning algorithms. In addition, PLSR models were capable of predicting Chla, Chlb, Chla+b, Car, AnC, Flv, and Phe contents, with R(2)(P) and RPD(P) values considered very good (0.81–0.88) for Car, Anc, and Flv and excellent (0.91–0.93) for Phe. According to the RPD(P) metric, the models were considered excellent (>2.10) for all variables estimated. Thus, this research shows the potential of machine learning solutions for ATR-FTIR spectroscopy analysis to classify, estimate, and characterize the biomolecules associated with secondary metabolites in lettuce. MDPI 2022-12-07 /pmc/articles/PMC9783279/ /pubmed/36559526 http://dx.doi.org/10.3390/plants11243413 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Falcioni, Renan
Moriwaki, Thaise
Gibin, Mariana Sversut
Vollmann, Alessandra
Pattaro, Mariana Carmona
Giacomelli, Marina Ellen
Sato, Francielle
Nanni, Marcos Rafael
Antunes, Werner Camargos
Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy
title Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy
title_full Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy
title_fullStr Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy
title_full_unstemmed Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy
title_short Classification and Prediction by Pigment Content in Lettuce (Lactuca sativa L.) Varieties Using Machine Learning and ATR-FTIR Spectroscopy
title_sort classification and prediction by pigment content in lettuce (lactuca sativa l.) varieties using machine learning and atr-ftir spectroscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9783279/
https://www.ncbi.nlm.nih.gov/pubmed/36559526
http://dx.doi.org/10.3390/plants11243413
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