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The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants

For efficient targeting of oncogenic K‐Ras interaction sites, a mechanistic picture of the Ras‐cycle is necessary. Herein, we used NMR relaxation techniques and molecular dynamics simulations to decipher the role of slow dynamics in wild‐type and three oncogenic P‐loop mutants of K‐Ras. Our measurem...

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Autores principales: Pálfy, Gyula, Menyhárd, Dóra K., Ákontz‐Kiss, Hanna, Vida, István, Batta, Gyula, Tőke, Orsolya, Perczel, András
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804424/
https://www.ncbi.nlm.nih.gov/pubmed/35781716
http://dx.doi.org/10.1002/chem.202201449
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author Pálfy, Gyula
Menyhárd, Dóra K.
Ákontz‐Kiss, Hanna
Vida, István
Batta, Gyula
Tőke, Orsolya
Perczel, András
author_facet Pálfy, Gyula
Menyhárd, Dóra K.
Ákontz‐Kiss, Hanna
Vida, István
Batta, Gyula
Tőke, Orsolya
Perczel, András
author_sort Pálfy, Gyula
collection PubMed
description For efficient targeting of oncogenic K‐Ras interaction sites, a mechanistic picture of the Ras‐cycle is necessary. Herein, we used NMR relaxation techniques and molecular dynamics simulations to decipher the role of slow dynamics in wild‐type and three oncogenic P‐loop mutants of K‐Ras. Our measurements reveal a dominant two‐state conformational exchange on the ms timescale in both GDP‐ and GTP‐bound K‐Ras. The identified low‐populated higher energy state in GDP‐loaded K‐Ras has a conformation reminiscent of a nucleotide‐bound/Mg(2+)‐free state characterized by shortened β2/β3‐strands and a partially released switch‐I region preparing K‐Ras for the interaction with the incoming nucleotide exchange factor and subsequent reactivation. By providing insight into mutation‐specific differences in K‐Ras structural dynamics, our systematic analysis improves our understanding of prolonged K‐Ras signaling and may aid the development of allosteric inhibitors targeting nucleotide exchange in K‐Ras.
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spelling pubmed-98044242023-01-03 The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants Pálfy, Gyula Menyhárd, Dóra K. Ákontz‐Kiss, Hanna Vida, István Batta, Gyula Tőke, Orsolya Perczel, András Chemistry Research Articles For efficient targeting of oncogenic K‐Ras interaction sites, a mechanistic picture of the Ras‐cycle is necessary. Herein, we used NMR relaxation techniques and molecular dynamics simulations to decipher the role of slow dynamics in wild‐type and three oncogenic P‐loop mutants of K‐Ras. Our measurements reveal a dominant two‐state conformational exchange on the ms timescale in both GDP‐ and GTP‐bound K‐Ras. The identified low‐populated higher energy state in GDP‐loaded K‐Ras has a conformation reminiscent of a nucleotide‐bound/Mg(2+)‐free state characterized by shortened β2/β3‐strands and a partially released switch‐I region preparing K‐Ras for the interaction with the incoming nucleotide exchange factor and subsequent reactivation. By providing insight into mutation‐specific differences in K‐Ras structural dynamics, our systematic analysis improves our understanding of prolonged K‐Ras signaling and may aid the development of allosteric inhibitors targeting nucleotide exchange in K‐Ras. John Wiley and Sons Inc. 2022-09-01 2022-10-21 /pmc/articles/PMC9804424/ /pubmed/35781716 http://dx.doi.org/10.1002/chem.202201449 Text en © 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Pálfy, Gyula
Menyhárd, Dóra K.
Ákontz‐Kiss, Hanna
Vida, István
Batta, Gyula
Tőke, Orsolya
Perczel, András
The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
title The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
title_full The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
title_fullStr The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
title_full_unstemmed The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
title_short The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
title_sort importance of mg(2+)‐free state in nucleotide exchange of oncogenic k‐ras mutants
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804424/
https://www.ncbi.nlm.nih.gov/pubmed/35781716
http://dx.doi.org/10.1002/chem.202201449
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