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The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants
For efficient targeting of oncogenic K‐Ras interaction sites, a mechanistic picture of the Ras‐cycle is necessary. Herein, we used NMR relaxation techniques and molecular dynamics simulations to decipher the role of slow dynamics in wild‐type and three oncogenic P‐loop mutants of K‐Ras. Our measurem...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804424/ https://www.ncbi.nlm.nih.gov/pubmed/35781716 http://dx.doi.org/10.1002/chem.202201449 |
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author | Pálfy, Gyula Menyhárd, Dóra K. Ákontz‐Kiss, Hanna Vida, István Batta, Gyula Tőke, Orsolya Perczel, András |
author_facet | Pálfy, Gyula Menyhárd, Dóra K. Ákontz‐Kiss, Hanna Vida, István Batta, Gyula Tőke, Orsolya Perczel, András |
author_sort | Pálfy, Gyula |
collection | PubMed |
description | For efficient targeting of oncogenic K‐Ras interaction sites, a mechanistic picture of the Ras‐cycle is necessary. Herein, we used NMR relaxation techniques and molecular dynamics simulations to decipher the role of slow dynamics in wild‐type and three oncogenic P‐loop mutants of K‐Ras. Our measurements reveal a dominant two‐state conformational exchange on the ms timescale in both GDP‐ and GTP‐bound K‐Ras. The identified low‐populated higher energy state in GDP‐loaded K‐Ras has a conformation reminiscent of a nucleotide‐bound/Mg(2+)‐free state characterized by shortened β2/β3‐strands and a partially released switch‐I region preparing K‐Ras for the interaction with the incoming nucleotide exchange factor and subsequent reactivation. By providing insight into mutation‐specific differences in K‐Ras structural dynamics, our systematic analysis improves our understanding of prolonged K‐Ras signaling and may aid the development of allosteric inhibitors targeting nucleotide exchange in K‐Ras. |
format | Online Article Text |
id | pubmed-9804424 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-98044242023-01-03 The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants Pálfy, Gyula Menyhárd, Dóra K. Ákontz‐Kiss, Hanna Vida, István Batta, Gyula Tőke, Orsolya Perczel, András Chemistry Research Articles For efficient targeting of oncogenic K‐Ras interaction sites, a mechanistic picture of the Ras‐cycle is necessary. Herein, we used NMR relaxation techniques and molecular dynamics simulations to decipher the role of slow dynamics in wild‐type and three oncogenic P‐loop mutants of K‐Ras. Our measurements reveal a dominant two‐state conformational exchange on the ms timescale in both GDP‐ and GTP‐bound K‐Ras. The identified low‐populated higher energy state in GDP‐loaded K‐Ras has a conformation reminiscent of a nucleotide‐bound/Mg(2+)‐free state characterized by shortened β2/β3‐strands and a partially released switch‐I region preparing K‐Ras for the interaction with the incoming nucleotide exchange factor and subsequent reactivation. By providing insight into mutation‐specific differences in K‐Ras structural dynamics, our systematic analysis improves our understanding of prolonged K‐Ras signaling and may aid the development of allosteric inhibitors targeting nucleotide exchange in K‐Ras. John Wiley and Sons Inc. 2022-09-01 2022-10-21 /pmc/articles/PMC9804424/ /pubmed/35781716 http://dx.doi.org/10.1002/chem.202201449 Text en © 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Pálfy, Gyula Menyhárd, Dóra K. Ákontz‐Kiss, Hanna Vida, István Batta, Gyula Tőke, Orsolya Perczel, András The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants |
title | The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants |
title_full | The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants |
title_fullStr | The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants |
title_full_unstemmed | The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants |
title_short | The Importance of Mg(2+)‐Free State in Nucleotide Exchange of Oncogenic K‐Ras Mutants |
title_sort | importance of mg(2+)‐free state in nucleotide exchange of oncogenic k‐ras mutants |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9804424/ https://www.ncbi.nlm.nih.gov/pubmed/35781716 http://dx.doi.org/10.1002/chem.202201449 |
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