Cargando…
Syllable-PBWT for space-efficient haplotype long-match query
MOTIVATION: The positional Burrows–Wheeler transform (PBWT) has led to tremendous strides in haplotype matching on biobank-scale data. For genetic genealogical search, PBWT-based methods have optimized the asymptotic runtime of finding long matches between a query haplotype and a predefined panel of...
Autores principales: | Wang, Victor, Naseri, Ardalan, Zhang, Shaojie, Zhi, Degui |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9805553/ https://www.ncbi.nlm.nih.gov/pubmed/36440908 http://dx.doi.org/10.1093/bioinformatics/btac734 |
Ejemplares similares
-
P-smoother: efficient PBWT smoothing of large haplotype panels
por: Yue, William, et al.
Publicado: (2022) -
Efficient haplotype matching between a query and a panel for genealogical search
por: Naseri, Ardalan, et al.
Publicado: (2019) -
Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
por: Durbin, Richard
Publicado: (2014) -
μ- PBWT: a lightweight r-indexing of the PBWT for storing and querying UK Biobank data
por: Cozzi, Davide, et al.
Publicado: (2023) -
RaPID-Query for fast identity by descent search and genealogical analysis
por: Wei, Yuan, et al.
Publicado: (2023)