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Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase

The biosynthetic enzyme, ForT, catalyses the formation of a C-C bond between 4-amino-1H-pyrazoledicarboxylic acid and MgPRPP to produce a C-nucleoside precursor of formycin A. The transformation catalysed by ForT is of chemical interest because it is one of only a few examples in which C-C bond form...

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Detalles Bibliográficos
Autores principales: Li, Wenbo, Girt, Georgina C., Radadiya, Ashish, Stewart, James J. P., Richards, Nigel G. J., Naismith, James H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832568/
https://www.ncbi.nlm.nih.gov/pubmed/36629016
http://dx.doi.org/10.1098/rsob.220287
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author Li, Wenbo
Girt, Georgina C.
Radadiya, Ashish
Stewart, James J. P.
Richards, Nigel G. J.
Naismith, James H.
author_facet Li, Wenbo
Girt, Georgina C.
Radadiya, Ashish
Stewart, James J. P.
Richards, Nigel G. J.
Naismith, James H.
author_sort Li, Wenbo
collection PubMed
description The biosynthetic enzyme, ForT, catalyses the formation of a C-C bond between 4-amino-1H-pyrazoledicarboxylic acid and MgPRPP to produce a C-nucleoside precursor of formycin A. The transformation catalysed by ForT is of chemical interest because it is one of only a few examples in which C-C bond formation takes place via an electrophilic substitution of a small, aromatic heterocycle. In addition, ForT is capable of discriminating between the aminopyrazoledicarboxylic acid and an analogue in which the amine is replaced by a hydroxyl group; a remarkable feat given the steric and electronic similarities of the two molecules. Here we report biophysical measurements, structural biology and quantum chemical calculations that provide a detailed molecular picture of ForT-catalysed C-C bond formation and the conformational changes that are coupled to catalysis. Our findings set the scene for employing engineered ForT variants in the biocatalytic production of novel, anti-viral C-nucleoside and C-nucleotide analogues.
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spelling pubmed-98325682023-01-20 Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase Li, Wenbo Girt, Georgina C. Radadiya, Ashish Stewart, James J. P. Richards, Nigel G. J. Naismith, James H. Open Biol Research The biosynthetic enzyme, ForT, catalyses the formation of a C-C bond between 4-amino-1H-pyrazoledicarboxylic acid and MgPRPP to produce a C-nucleoside precursor of formycin A. The transformation catalysed by ForT is of chemical interest because it is one of only a few examples in which C-C bond formation takes place via an electrophilic substitution of a small, aromatic heterocycle. In addition, ForT is capable of discriminating between the aminopyrazoledicarboxylic acid and an analogue in which the amine is replaced by a hydroxyl group; a remarkable feat given the steric and electronic similarities of the two molecules. Here we report biophysical measurements, structural biology and quantum chemical calculations that provide a detailed molecular picture of ForT-catalysed C-C bond formation and the conformational changes that are coupled to catalysis. Our findings set the scene for employing engineered ForT variants in the biocatalytic production of novel, anti-viral C-nucleoside and C-nucleotide analogues. The Royal Society 2023-01-11 /pmc/articles/PMC9832568/ /pubmed/36629016 http://dx.doi.org/10.1098/rsob.220287 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited.
spellingShingle Research
Li, Wenbo
Girt, Georgina C.
Radadiya, Ashish
Stewart, James J. P.
Richards, Nigel G. J.
Naismith, James H.
Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
title Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
title_full Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
title_fullStr Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
title_full_unstemmed Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
title_short Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
title_sort experimental and computational snapshots of c-c bond formation in a c-nucleoside synthase
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832568/
https://www.ncbi.nlm.nih.gov/pubmed/36629016
http://dx.doi.org/10.1098/rsob.220287
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