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Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase
The biosynthetic enzyme, ForT, catalyses the formation of a C-C bond between 4-amino-1H-pyrazoledicarboxylic acid and MgPRPP to produce a C-nucleoside precursor of formycin A. The transformation catalysed by ForT is of chemical interest because it is one of only a few examples in which C-C bond form...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832568/ https://www.ncbi.nlm.nih.gov/pubmed/36629016 http://dx.doi.org/10.1098/rsob.220287 |
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author | Li, Wenbo Girt, Georgina C. Radadiya, Ashish Stewart, James J. P. Richards, Nigel G. J. Naismith, James H. |
author_facet | Li, Wenbo Girt, Georgina C. Radadiya, Ashish Stewart, James J. P. Richards, Nigel G. J. Naismith, James H. |
author_sort | Li, Wenbo |
collection | PubMed |
description | The biosynthetic enzyme, ForT, catalyses the formation of a C-C bond between 4-amino-1H-pyrazoledicarboxylic acid and MgPRPP to produce a C-nucleoside precursor of formycin A. The transformation catalysed by ForT is of chemical interest because it is one of only a few examples in which C-C bond formation takes place via an electrophilic substitution of a small, aromatic heterocycle. In addition, ForT is capable of discriminating between the aminopyrazoledicarboxylic acid and an analogue in which the amine is replaced by a hydroxyl group; a remarkable feat given the steric and electronic similarities of the two molecules. Here we report biophysical measurements, structural biology and quantum chemical calculations that provide a detailed molecular picture of ForT-catalysed C-C bond formation and the conformational changes that are coupled to catalysis. Our findings set the scene for employing engineered ForT variants in the biocatalytic production of novel, anti-viral C-nucleoside and C-nucleotide analogues. |
format | Online Article Text |
id | pubmed-9832568 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-98325682023-01-20 Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase Li, Wenbo Girt, Georgina C. Radadiya, Ashish Stewart, James J. P. Richards, Nigel G. J. Naismith, James H. Open Biol Research The biosynthetic enzyme, ForT, catalyses the formation of a C-C bond between 4-amino-1H-pyrazoledicarboxylic acid and MgPRPP to produce a C-nucleoside precursor of formycin A. The transformation catalysed by ForT is of chemical interest because it is one of only a few examples in which C-C bond formation takes place via an electrophilic substitution of a small, aromatic heterocycle. In addition, ForT is capable of discriminating between the aminopyrazoledicarboxylic acid and an analogue in which the amine is replaced by a hydroxyl group; a remarkable feat given the steric and electronic similarities of the two molecules. Here we report biophysical measurements, structural biology and quantum chemical calculations that provide a detailed molecular picture of ForT-catalysed C-C bond formation and the conformational changes that are coupled to catalysis. Our findings set the scene for employing engineered ForT variants in the biocatalytic production of novel, anti-viral C-nucleoside and C-nucleotide analogues. The Royal Society 2023-01-11 /pmc/articles/PMC9832568/ /pubmed/36629016 http://dx.doi.org/10.1098/rsob.220287 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Research Li, Wenbo Girt, Georgina C. Radadiya, Ashish Stewart, James J. P. Richards, Nigel G. J. Naismith, James H. Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase |
title | Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase |
title_full | Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase |
title_fullStr | Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase |
title_full_unstemmed | Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase |
title_short | Experimental and computational snapshots of C-C bond formation in a C-nucleoside synthase |
title_sort | experimental and computational snapshots of c-c bond formation in a c-nucleoside synthase |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9832568/ https://www.ncbi.nlm.nih.gov/pubmed/36629016 http://dx.doi.org/10.1098/rsob.220287 |
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