Using whole genome sequence to compare variant callers and breed differences of US sheep

As whole genome sequence (WGS) data sets have become abundant and widely available, so has the need for variant detection and scoring. The aim of this study was to compare the accuracy of commonly used variant calling programs, Freebayes and GATK HaplotypeCaller (GATK-HC), and to use U.S. sheep WGS...

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Detalles Bibliográficos
Autores principales: Stegemiller, Morgan R., Redden, Reid R., Notter, David R., Taylor, Todd, Taylor, J. Bret, Cockett, Noelle E., Heaton, Michael P., Kalbfleisch, Theodore S., Murdoch, Brenda M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Genetics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846548/
https://www.ncbi.nlm.nih.gov/pubmed/36685812
http://dx.doi.org/10.3389/fgene.2022.1060882

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9846548/
https://www.ncbi.nlm.nih.gov/pubmed/36685812
http://dx.doi.org/10.3389/fgene.2022.1060882

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