BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis

Generating the hash values of short subsequences, called seeds, enables quickly identifying similarities between genomic sequences by matching seeds with a single lookup of their hash values. However, these hash values can be used only for finding exact-matching seeds as the conventional hashing met...

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Detalles Bibliográficos
Autores principales: Firtina, Can, Park, Jisung, Alser, Mohammed, Kim, Jeremie S, Cali, Damla Senol, Shahroodi, Taha, Ghiasi, Nika Mansouri, Singh, Gagandeep, Kanellopoulos, Konstantinos, Alkan, Can, Mutlu, Onur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Methods Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9853099/
https://www.ncbi.nlm.nih.gov/pubmed/36685727
http://dx.doi.org/10.1093/nargab/lqad004

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9853099/
https://www.ncbi.nlm.nih.gov/pubmed/36685727
http://dx.doi.org/10.1093/nargab/lqad004

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