Capture-seq protocol and TE-reX pipeline guidelines for detection of recombination of repeat elements in short- and long-DNA reads libraries

Recombination of repeat elements is an important source of genomic variation in human tissues. Here, we describe steps to prepare libraries enriched for repeat elements starting from the genomic DNA of any species. We also detail the computational post-processing of the TE-reX pipeline output to gen...

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Detalles Bibliográficos
Autores principales: Pascarella, Giovanni, Straniero, Letizia, Frith, Martin, Carninci, Piero
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Protocol
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860146/
http://dx.doi.org/10.1016/j.xpro.2022.102027

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9860146/
http://dx.doi.org/10.1016/j.xpro.2022.102027

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