Cargando…
LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2
Many RNAs fold into multiple structures at equilibrium, and there is a need to sample these structures according to their probabilities in the ensemble. The conventional sampling algorithm suffers from two limitations: (i) the sampling phase is slow due to many repeated calculations; and (ii) the en...
Autores principales: | Zhang, He, Li, Sizhen, Zhang, Liang, Mathews, David H, Huang, Liang |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9881153/ https://www.ncbi.nlm.nih.gov/pubmed/36401871 http://dx.doi.org/10.1093/nar/gkac1029 |
Ejemplares similares
-
LinearCoFold and LinearCoPartition: linear-time algorithms for secondary structure prediction of interacting RNA molecules
por: Zhang, He, et al.
Publicado: (2023) -
Polysome-profiling in small tissue samples
por: Liang, Shuo, et al.
Publicado: (2018) -
Personalized characterization of diseases using sample-specific networks
por: Liu, Xiaoping, et al.
Publicado: (2016) -
Stable gene expression for normalisation and single-sample scoring
por: Bhuva, Dharmesh D, et al.
Publicado: (2020) -
Real-time monitoring of aRNA production during T7 amplification to prevent the loss of sample representation during microarray hybridization sample preparation
por: Gilbert, Isabelle, et al.
Publicado: (2009)