Metadata retrieval from sequence databases with ffq

MOTIVATION: Several genomic databases host data and metadata for an ever-growing collection of sequence datasets. While these databases have a shared hierarchical structure, there are no tools specifically designed to leverage it for metadata extraction. RESULTS: We present a command-line tool, call...

Descripción completa

Detalles Bibliográficos
Autores principales: Gálvez-Merchán, Ángel, Min, Kyung Hoi (Joseph), Pachter, Lior, Booeshaghi, A Sina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9883619/
https://www.ncbi.nlm.nih.gov/pubmed/36610997
http://dx.doi.org/10.1093/bioinformatics/btac667

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9883619/
https://www.ncbi.nlm.nih.gov/pubmed/36610997
http://dx.doi.org/10.1093/bioinformatics/btac667

Ejemplares similares