Cargando…

Assessing HLA imputation accuracy in a West African population

Mostrar otras versiones (1)

The Human Leukocyte Antigen (HLA) region plays an important role in autoimmune and infectious diseases. HLA is a highly polymorphic region and thus difficult to impute. We therefore sought to evaluate HLA imputation accuracy, specifically in a West African population, since they are understudied and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nanjala, Ruth, Mbiyavanga, Mamana, Hashim, Suhaila, de Villiers, Santie, Mulder, Nicola
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9900754/ https://www.ncbi.nlm.nih.gov/pubmed/36747714 http://dx.doi.org/10.1101/2023.01.23.525129

Ejemplares similares

Assessing HLA imputation accuracy in a West African population
por: Nanjala, Ruth, et al.
Publicado: (2023)

Performance and accuracy evaluation of reference panels for genotype imputation in sub-Saharan African populations
por: Sengupta, Dhriti, et al.
Publicado: (2023)

A genome-wide association study identifies distinct variants associated with pulmonary function among European and African ancestries from the UK Biobank
por: Sinkala, Musalula, et al.
Publicado: (2023)

Inference of Ancestries and Heterozygosity Proportion and Genotype Imputation in West African Cattle Populations
por: Gebrehiwot, Netsanet Z., et al.
Publicado: (2021)

Multi-Population Classical HLA Type Imputation
por: Dilthey, Alexander, et al.
Publicado: (2013)

Increasing accuracy of HLA imputation by a population-specific reference panel in a FinnGen biobank cohort
por: Ritari, Jarmo, et al.
Publicado: (2020)

Imputation Accuracy Across Global Human Populations
por: Cahoon, Jordan L., et al.
Publicado: (2023)

Comparison of HLA allelic imputation programs
por: Karnes, Jason H., et al.
Publicado: (2017)

Assessing Accuracy of Genotype Imputation in American Indians
por: Malhotra, Alka, et al.
Publicado: (2014)

“Broadband” Bioinformatics Skills Transfer with the Knowledge Transfer Programme (KTP): Educational Model for Upliftment and Sustainable Development
por: Chimusa, Emile R., et al.
Publicado: (2015)

High resolution HLA haplotyping by imputation for a British population bioresource
por: Neville, Matt J., et al.
Publicado: (2017)

High-accuracy imputation for HLA class I and II genes based on high-resolution SNP data of population-specific references
por: Khor, S-S, et al.
Publicado: (2015)

When Does Choice of Accuracy Measure Alter Imputation Accuracy Assessments?
por: Ramnarine, Shelina, et al.
Publicado: (2015)

HIBAG—HLA genotype imputation with attribute bagging
por: Zheng, X, et al.
Publicado: (2014)

Estimating the accuracy of geographical imputation
por: Henry, Kevin A, et al.
Publicado: (2008)

Genotype imputation accuracy with different reference panels in admixed populations
por: Huang, Guan-Hua, et al.
Publicado: (2014)

Accurate imputation of human leukocyte antigens with CookHLA
por: Cook, Seungho, et al.
Publicado: (2021)

Analyzing the Korean reference genome with meta-imputation increased the imputation accuracy and spectrum of rare variants in the Korean population
por: Hwang, Mi Yeong, et al.
Publicado: (2022)

Accuracy of genotype imputation in Nelore cattle
por: Carvalheiro, Roberto, et al.
Publicado: (2014)

Impact of genetic similarity on imputation accuracy
por: Roshyara, Nab Raj, et al.
Publicado: (2015)

Accuracy of genotype imputation in Labrador Retrievers
por: Friedrich, J., et al.
Publicado: (2018)

ImputAccur: fast and user-friendly calculation of genotype-imputation accuracy-measures
por: Thormann, Kolja A., et al.
Publicado: (2022)

Evaluating the Accuracy of Imputation Methods in a Five-Way Admixed Population
por: Schurz, Haiko, et al.
Publicado: (2019)

Imputation-Based Meta-Analysis of Severe Malaria in Three African Populations
por: Band, Gavin, et al.
Publicado: (2013)

Assessment of alternative genotyping strategies to maximize imputation accuracy at minimal cost
por: Huang, Yijian, et al.
Publicado: (2012)

The H3ABioNet helpdesk: an online bioinformatics resource, enhancing Africa’s capacity for genomics research
por: Kumuthini, Judit, et al.
Publicado: (2019)

Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
por: Ventura, Ricardo V., et al.
Publicado: (2016)

Proposed minimum information guideline for kidney disease—research and clinical data reporting: a cross-sectional study
por: Kumuthini, Judit, et al.
Publicado: (2019)

Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle
por: Bouwman, Aniek C, et al.
Publicado: (2014)

On Combining Reference Data to Improve Imputation Accuracy
por: Chen, Jun, et al.
Publicado: (2013)

Accuracy of imputation to whole-genome sequence in sheep
por: Bolormaa, Sunduimijid, et al.
Publicado: (2019)

Achieving improved accuracy for imputation of ancient DNA
por: Ausmees, Kristiina, et al.
Publicado: (2022)

Accuracy of imputation using the most common sires as reference population in layer chickens
por: Heidaritabar, Marzieh, et al.
Publicado: (2015)

Imputation accuracy to whole-genome sequence in Nellore cattle
por: Fernandes Júnior, Gerardo A., et al.
Publicado: (2021)

Correction: Imputation-Based Meta-Analysis of Severe Malaria in Three African Populations
por: Band, Gavin, et al.
Publicado: (2013)

A population-specific reference panel for improved genotype imputation in African Americans
por: O’Connell, Jared, et al.
Publicado: (2021)

Blood donor biobank and HLA imputation as a resource for HLA homozygous cells for therapeutic and research use
por: Clancy, Jonna, et al.
Publicado: (2022)

Case Fatality Ratio Estimates for the 2013–2016 West African Ebola Epidemic: Application of Boosted Regression Trees for Imputation
por: Forna, Alpha, et al.
Publicado: (2020)

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel
por: Mitt, Mario, et al.
Publicado: (2017)

MergeReference: A Tool for Merging Reference Panels for HLA Imputation
por: Cook, Seungho, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_0j5dr59b3hi2k2sjo1o3jdcv7r