Cargando…

Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles

In the absence of preorganization, macrocyclization reactions are often plagued by oligomeric and polymeric side products. Here, a network of hydrogen bonds was identified as the basis for quantitative yields of macrocycles derived from the dimerization of monomers. Oligomers and polymers were not o...

Descripción completa

Detalles Bibliográficos
Autores principales: Menke, Alexander J., Henderson, Nicholas C., Kouretas, Lola C., Estenson, Anne N., Janesko, Benjamin G., Simanek, Eric E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9921993/
https://www.ncbi.nlm.nih.gov/pubmed/36770811
http://dx.doi.org/10.3390/molecules28031144
_version_ 1784887446163423232
author Menke, Alexander J.
Henderson, Nicholas C.
Kouretas, Lola C.
Estenson, Anne N.
Janesko, Benjamin G.
Simanek, Eric E.
author_facet Menke, Alexander J.
Henderson, Nicholas C.
Kouretas, Lola C.
Estenson, Anne N.
Janesko, Benjamin G.
Simanek, Eric E.
author_sort Menke, Alexander J.
collection PubMed
description In the absence of preorganization, macrocyclization reactions are often plagued by oligomeric and polymeric side products. Here, a network of hydrogen bonds was identified as the basis for quantitative yields of macrocycles derived from the dimerization of monomers. Oligomers and polymers were not observed. Macrocyclization, the result of the formation of two hydrazones, was hypothesized to proceed in two steps. After condensation to yield the monohydrazone, a network of hydrogen bonds formed to preorganize the terminal acetal and hydrazine groups for cyclization. Experimental evidence for preorganization derived from macrocycles and acyclic models. Solution NMR spectroscopy and single-crystal X-ray diffraction revealed that the macrocycles isolated from the cyclization reaction were protonated twice. These protons contributed to an intramolecular network of hydrogen bonds that engaged distant carbonyl groups to realize a long-range order. DFT calculations showed that this network of hydrogen bonds contributed 8.7 kcal/mol to stability. Acyclic models recapitulated this network in solution. Condensation of an acetal and a triazinyl hydrazine, which adopted a number of conformational isomers, yielded a hydrazone that adopted a favored rotamer conformation in solution. The critical hydrogen-bonded proton was also evident. DFT calculations of acyclic models showed that the rotamers were isoenergetic when deprotonated. Upon protonation, however, energies diverged with one low-energy rotamer adopting the conformation observed in the macrocycle. This conformation anchored the network of hydrogen bonds of the intermediate. Computation revealed that the hydrogen-bonded network in the acyclic intermediate contributed up to 14 kcal/mol of stability and preorganized the acetal and hydrazine for cyclization.
format Online
Article
Text
id pubmed-9921993
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-99219932023-02-12 Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles Menke, Alexander J. Henderson, Nicholas C. Kouretas, Lola C. Estenson, Anne N. Janesko, Benjamin G. Simanek, Eric E. Molecules Article In the absence of preorganization, macrocyclization reactions are often plagued by oligomeric and polymeric side products. Here, a network of hydrogen bonds was identified as the basis for quantitative yields of macrocycles derived from the dimerization of monomers. Oligomers and polymers were not observed. Macrocyclization, the result of the formation of two hydrazones, was hypothesized to proceed in two steps. After condensation to yield the monohydrazone, a network of hydrogen bonds formed to preorganize the terminal acetal and hydrazine groups for cyclization. Experimental evidence for preorganization derived from macrocycles and acyclic models. Solution NMR spectroscopy and single-crystal X-ray diffraction revealed that the macrocycles isolated from the cyclization reaction were protonated twice. These protons contributed to an intramolecular network of hydrogen bonds that engaged distant carbonyl groups to realize a long-range order. DFT calculations showed that this network of hydrogen bonds contributed 8.7 kcal/mol to stability. Acyclic models recapitulated this network in solution. Condensation of an acetal and a triazinyl hydrazine, which adopted a number of conformational isomers, yielded a hydrazone that adopted a favored rotamer conformation in solution. The critical hydrogen-bonded proton was also evident. DFT calculations of acyclic models showed that the rotamers were isoenergetic when deprotonated. Upon protonation, however, energies diverged with one low-energy rotamer adopting the conformation observed in the macrocycle. This conformation anchored the network of hydrogen bonds of the intermediate. Computation revealed that the hydrogen-bonded network in the acyclic intermediate contributed up to 14 kcal/mol of stability and preorganized the acetal and hydrazine for cyclization. MDPI 2023-01-23 /pmc/articles/PMC9921993/ /pubmed/36770811 http://dx.doi.org/10.3390/molecules28031144 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Menke, Alexander J.
Henderson, Nicholas C.
Kouretas, Lola C.
Estenson, Anne N.
Janesko, Benjamin G.
Simanek, Eric E.
Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles
title Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles
title_full Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles
title_fullStr Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles
title_full_unstemmed Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles
title_short Computational and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond Network in the Quantitative Dimerization of 24-Atom Macrocycles
title_sort computational and experimental evidence for templated macrocyclization: the role of a hydrogen bond network in the quantitative dimerization of 24-atom macrocycles
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9921993/
https://www.ncbi.nlm.nih.gov/pubmed/36770811
http://dx.doi.org/10.3390/molecules28031144
work_keys_str_mv AT menkealexanderj computationalandexperimentalevidencefortemplatedmacrocyclizationtheroleofahydrogenbondnetworkinthequantitativedimerizationof24atommacrocycles
AT hendersonnicholasc computationalandexperimentalevidencefortemplatedmacrocyclizationtheroleofahydrogenbondnetworkinthequantitativedimerizationof24atommacrocycles
AT kouretaslolac computationalandexperimentalevidencefortemplatedmacrocyclizationtheroleofahydrogenbondnetworkinthequantitativedimerizationof24atommacrocycles
AT estensonannen computationalandexperimentalevidencefortemplatedmacrocyclizationtheroleofahydrogenbondnetworkinthequantitativedimerizationof24atommacrocycles
AT janeskobenjaming computationalandexperimentalevidencefortemplatedmacrocyclizationtheroleofahydrogenbondnetworkinthequantitativedimerizationof24atommacrocycles
AT simanekerice computationalandexperimentalevidencefortemplatedmacrocyclizationtheroleofahydrogenbondnetworkinthequantitativedimerizationof24atommacrocycles