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Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
[Image: see text] The generation of enantiodivergent biocatalysts for C–H oxyfunctionalizations is ever more important in modern synthetic chemistry. Here, we have applied the FuncLib algorithm based on phylogenetic and Rosetta calculations to design a diverse repertoire of active, stable, and enant...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936548/ https://www.ncbi.nlm.nih.gov/pubmed/36689349 http://dx.doi.org/10.1021/jacs.2c11118 |
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author | Gomez de Santos, Patricia Mateljak, Ivan Hoang, Manh Dat Fleishman, Sarel J. Hollmann, Frank Alcalde, Miguel |
author_facet | Gomez de Santos, Patricia Mateljak, Ivan Hoang, Manh Dat Fleishman, Sarel J. Hollmann, Frank Alcalde, Miguel |
author_sort | Gomez de Santos, Patricia |
collection | PubMed |
description | [Image: see text] The generation of enantiodivergent biocatalysts for C–H oxyfunctionalizations is ever more important in modern synthetic chemistry. Here, we have applied the FuncLib algorithm based on phylogenetic and Rosetta calculations to design a diverse repertoire of active, stable, and enantiodivergent fungal peroxygenases. 24 designs, each carrying 4–5 mutations in the catalytic core, were expressed functionally in yeast and benchmarked against characteristic model compounds. Several designs were active and stable in a range of temperature and pH, displaying unprecedented enantiodivergence, changing regioselectivity from alkyl to aromatic hydroxylation, and increasing catalytic efficiencies up to 10-fold, with 15-fold improvements in total turnover numbers over the parental enzyme. We find that this dramatic functional divergence stems from beneficial epistasis among the mutations and an extensive reorganization of the heme channel. Our work demonstrates that FuncLib can rapidly design highly functional libraries enriched in enantioselective peroxygenases not seen in nature for a range of biotechnological applications. |
format | Online Article Text |
id | pubmed-9936548 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-99365482023-02-18 Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions Gomez de Santos, Patricia Mateljak, Ivan Hoang, Manh Dat Fleishman, Sarel J. Hollmann, Frank Alcalde, Miguel J Am Chem Soc [Image: see text] The generation of enantiodivergent biocatalysts for C–H oxyfunctionalizations is ever more important in modern synthetic chemistry. Here, we have applied the FuncLib algorithm based on phylogenetic and Rosetta calculations to design a diverse repertoire of active, stable, and enantiodivergent fungal peroxygenases. 24 designs, each carrying 4–5 mutations in the catalytic core, were expressed functionally in yeast and benchmarked against characteristic model compounds. Several designs were active and stable in a range of temperature and pH, displaying unprecedented enantiodivergence, changing regioselectivity from alkyl to aromatic hydroxylation, and increasing catalytic efficiencies up to 10-fold, with 15-fold improvements in total turnover numbers over the parental enzyme. We find that this dramatic functional divergence stems from beneficial epistasis among the mutations and an extensive reorganization of the heme channel. Our work demonstrates that FuncLib can rapidly design highly functional libraries enriched in enantioselective peroxygenases not seen in nature for a range of biotechnological applications. American Chemical Society 2023-01-23 /pmc/articles/PMC9936548/ /pubmed/36689349 http://dx.doi.org/10.1021/jacs.2c11118 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Gomez de Santos, Patricia Mateljak, Ivan Hoang, Manh Dat Fleishman, Sarel J. Hollmann, Frank Alcalde, Miguel Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions |
title | Repertoire of Computationally
Designed Peroxygenases
for Enantiodivergent C–H Oxyfunctionalization Reactions |
title_full | Repertoire of Computationally
Designed Peroxygenases
for Enantiodivergent C–H Oxyfunctionalization Reactions |
title_fullStr | Repertoire of Computationally
Designed Peroxygenases
for Enantiodivergent C–H Oxyfunctionalization Reactions |
title_full_unstemmed | Repertoire of Computationally
Designed Peroxygenases
for Enantiodivergent C–H Oxyfunctionalization Reactions |
title_short | Repertoire of Computationally
Designed Peroxygenases
for Enantiodivergent C–H Oxyfunctionalization Reactions |
title_sort | repertoire of computationally
designed peroxygenases
for enantiodivergent c–h oxyfunctionalization reactions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936548/ https://www.ncbi.nlm.nih.gov/pubmed/36689349 http://dx.doi.org/10.1021/jacs.2c11118 |
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