Cargando…

Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions

[Image: see text] The generation of enantiodivergent biocatalysts for C–H oxyfunctionalizations is ever more important in modern synthetic chemistry. Here, we have applied the FuncLib algorithm based on phylogenetic and Rosetta calculations to design a diverse repertoire of active, stable, and enant...

Descripción completa

Detalles Bibliográficos
Autores principales: Gomez de Santos, Patricia, Mateljak, Ivan, Hoang, Manh Dat, Fleishman, Sarel J., Hollmann, Frank, Alcalde, Miguel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936548/
https://www.ncbi.nlm.nih.gov/pubmed/36689349
http://dx.doi.org/10.1021/jacs.2c11118
_version_ 1784890256190865408
author Gomez de Santos, Patricia
Mateljak, Ivan
Hoang, Manh Dat
Fleishman, Sarel J.
Hollmann, Frank
Alcalde, Miguel
author_facet Gomez de Santos, Patricia
Mateljak, Ivan
Hoang, Manh Dat
Fleishman, Sarel J.
Hollmann, Frank
Alcalde, Miguel
author_sort Gomez de Santos, Patricia
collection PubMed
description [Image: see text] The generation of enantiodivergent biocatalysts for C–H oxyfunctionalizations is ever more important in modern synthetic chemistry. Here, we have applied the FuncLib algorithm based on phylogenetic and Rosetta calculations to design a diverse repertoire of active, stable, and enantiodivergent fungal peroxygenases. 24 designs, each carrying 4–5 mutations in the catalytic core, were expressed functionally in yeast and benchmarked against characteristic model compounds. Several designs were active and stable in a range of temperature and pH, displaying unprecedented enantiodivergence, changing regioselectivity from alkyl to aromatic hydroxylation, and increasing catalytic efficiencies up to 10-fold, with 15-fold improvements in total turnover numbers over the parental enzyme. We find that this dramatic functional divergence stems from beneficial epistasis among the mutations and an extensive reorganization of the heme channel. Our work demonstrates that FuncLib can rapidly design highly functional libraries enriched in enantioselective peroxygenases not seen in nature for a range of biotechnological applications.
format Online
Article
Text
id pubmed-9936548
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-99365482023-02-18 Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions Gomez de Santos, Patricia Mateljak, Ivan Hoang, Manh Dat Fleishman, Sarel J. Hollmann, Frank Alcalde, Miguel J Am Chem Soc [Image: see text] The generation of enantiodivergent biocatalysts for C–H oxyfunctionalizations is ever more important in modern synthetic chemistry. Here, we have applied the FuncLib algorithm based on phylogenetic and Rosetta calculations to design a diverse repertoire of active, stable, and enantiodivergent fungal peroxygenases. 24 designs, each carrying 4–5 mutations in the catalytic core, were expressed functionally in yeast and benchmarked against characteristic model compounds. Several designs were active and stable in a range of temperature and pH, displaying unprecedented enantiodivergence, changing regioselectivity from alkyl to aromatic hydroxylation, and increasing catalytic efficiencies up to 10-fold, with 15-fold improvements in total turnover numbers over the parental enzyme. We find that this dramatic functional divergence stems from beneficial epistasis among the mutations and an extensive reorganization of the heme channel. Our work demonstrates that FuncLib can rapidly design highly functional libraries enriched in enantioselective peroxygenases not seen in nature for a range of biotechnological applications. American Chemical Society 2023-01-23 /pmc/articles/PMC9936548/ /pubmed/36689349 http://dx.doi.org/10.1021/jacs.2c11118 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Gomez de Santos, Patricia
Mateljak, Ivan
Hoang, Manh Dat
Fleishman, Sarel J.
Hollmann, Frank
Alcalde, Miguel
Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
title Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
title_full Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
title_fullStr Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
title_full_unstemmed Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
title_short Repertoire of Computationally Designed Peroxygenases for Enantiodivergent C–H Oxyfunctionalization Reactions
title_sort repertoire of computationally designed peroxygenases for enantiodivergent c–h oxyfunctionalization reactions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9936548/
https://www.ncbi.nlm.nih.gov/pubmed/36689349
http://dx.doi.org/10.1021/jacs.2c11118
work_keys_str_mv AT gomezdesantospatricia repertoireofcomputationallydesignedperoxygenasesforenantiodivergentchoxyfunctionalizationreactions
AT mateljakivan repertoireofcomputationallydesignedperoxygenasesforenantiodivergentchoxyfunctionalizationreactions
AT hoangmanhdat repertoireofcomputationallydesignedperoxygenasesforenantiodivergentchoxyfunctionalizationreactions
AT fleishmansarelj repertoireofcomputationallydesignedperoxygenasesforenantiodivergentchoxyfunctionalizationreactions
AT hollmannfrank repertoireofcomputationallydesignedperoxygenasesforenantiodivergentchoxyfunctionalizationreactions
AT alcaldemiguel repertoireofcomputationallydesignedperoxygenasesforenantiodivergentchoxyfunctionalizationreactions