The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis

Holarrhena pubescens Wall. ex G. Don, 1837 is an important medicinal plant belonging to the Holarrhena genus in the Apocynaceae family. In this study, the complete chloroplast (cp) genome sequence of H. pubescens was sequenced using the Illumina NovaSeq platform. The cp genome of H. pubescens was 16...

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Autores principales: Xiang, Rushuang, Wang, Sijia, Wan, Huihua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Plastome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9937002/
https://www.ncbi.nlm.nih.gov/pubmed/36816055
http://dx.doi.org/10.1080/23802359.2022.2162349
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author Xiang, Rushuang
Wang, Sijia
Wan, Huihua
author_facet Xiang, Rushuang
Wang, Sijia
Wan, Huihua
author_sort Xiang, Rushuang
collection PubMed
description Holarrhena pubescens Wall. ex G. Don, 1837 is an important medicinal plant belonging to the Holarrhena genus in the Apocynaceae family. In this study, the complete chloroplast (cp) genome sequence of H. pubescens was sequenced using the Illumina NovaSeq platform. The cp genome of H. pubescens was 160,108 bp in length with 37.21% overall GC content. The cp genome of H. pubescens containing a large single-copy region (LSC, 88,685 bp), a small single-copy region (SSC, 18,671 bp), and a pair of inverted repeat regions (SSC, 26,376 bp). The cp genome encoded 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on complete protein coding genes sequences revealed that H. pubescens was closest to Beaumontia murtonii.
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spelling pubmed-99370022023-02-18 The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis Xiang, Rushuang Wang, Sijia Wan, Huihua Mitochondrial DNA B Resour Plastome Announcement Holarrhena pubescens Wall. ex G. Don, 1837 is an important medicinal plant belonging to the Holarrhena genus in the Apocynaceae family. In this study, the complete chloroplast (cp) genome sequence of H. pubescens was sequenced using the Illumina NovaSeq platform. The cp genome of H. pubescens was 160,108 bp in length with 37.21% overall GC content. The cp genome of H. pubescens containing a large single-copy region (LSC, 88,685 bp), a small single-copy region (SSC, 18,671 bp), and a pair of inverted repeat regions (SSC, 26,376 bp). The cp genome encoded 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on complete protein coding genes sequences revealed that H. pubescens was closest to Beaumontia murtonii. Taylor & Francis 2023-02-16 /pmc/articles/PMC9937002/ /pubmed/36816055 http://dx.doi.org/10.1080/23802359.2022.2162349 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Xiang, Rushuang
Wang, Sijia
Wan, Huihua
The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis
title The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis
title_full The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis
title_fullStr The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis
title_short The complete chloroplast genome of Holarrhena pubescens and its phylogenetic analysis
title_sort complete chloroplast genome of holarrhena pubescens and its phylogenetic analysis
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9937002/
https://www.ncbi.nlm.nih.gov/pubmed/36816055
http://dx.doi.org/10.1080/23802359.2022.2162349
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