FrangiPANe, a tool for creating a panreference using left behind reads

We present here FrangiPANe, a pipeline developed to build panreference using short reads through a map-then-assemble strategy. Applying it to 248 African rice genomes using an improved CG14 reference genome, we identified an average of 8 Mb of new sequences and 5290 new contigs per individual. In to...

Descripción completa

Detalles Bibliográficos
Autores principales: Christine, Tranchant-Dubreuil, Clothilde, Chenal, Mathieu, Blaison, Laurence, Albar, Valentin, Klein, Cédric, Mariac, Wing Rod, A, Yves, Vigouroux, Francois, Sabot
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Application Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9940456/
https://www.ncbi.nlm.nih.gov/pubmed/36814455
http://dx.doi.org/10.1093/nargab/lqad013

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9940456/
https://www.ncbi.nlm.nih.gov/pubmed/36814455
http://dx.doi.org/10.1093/nargab/lqad013

Ejemplares similares