Cargando…
Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance
BACKGROUND: DNA replication alteration is a hallmark of patients with lung adenocarcinoma (LUAD) and is frequently observed in LUAD progression. Origin recognition complex (ORC) 1, ORC2, ORC3, ORC4, ORC5, and ORC6 form a replication–initiator complex to mediate DNA replication, which plays a key rol...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9972100/ https://www.ncbi.nlm.nih.gov/pubmed/36205357 http://dx.doi.org/10.1002/cam4.5238 |
_version_ | 1784898250472423424 |
---|---|
author | Tang, Min Chen, Juan Zeng, Tian Ye, Dong‐mei Li, Yu‐kun Zou, Juan Zhang, Yu‐ping |
author_facet | Tang, Min Chen, Juan Zeng, Tian Ye, Dong‐mei Li, Yu‐kun Zou, Juan Zhang, Yu‐ping |
author_sort | Tang, Min |
collection | PubMed |
description | BACKGROUND: DNA replication alteration is a hallmark of patients with lung adenocarcinoma (LUAD) and is frequently observed in LUAD progression. Origin recognition complex (ORC) 1, ORC2, ORC3, ORC4, ORC5, and ORC6 form a replication–initiator complex to mediate DNA replication, which plays a key role in carcinogenesis, while their roles in LUAD remain poorly understood. METHODS: The mRNA and protein expression of ORCs was confirmed by the GEPIA, HPA, CPTAC, and TCGA databases. The protein–protein interaction network was analyzed by the GeneMANIA database. Functional enrichment was confirmed by the Metascape database. The effects of ORCs on immune infiltration were validated by the TIMER database. The prognostic significance of ORCs in LUAD was confirmed by the KM‐plot and GENT2 databases. DNA alteration and protein structure were determined in the cBioProtal and PDB databases. Moreover, the protein expression and prognostic value of ORCs were confirmed in our LUAD data sets by immunohistochemistry (IHC) staining. RESULTS: ORC mRNA and protein were significantly increased in patients with LUAD compared with corresponding normal tissue samples. The results of IHC staining analysis were similar result to those of the above bioinformatics analysis. Furthermore, ORC1 and ORC6 had significant prognostic values for LUAD patients. Furthermore, the ORC cooperatively promoted LUAD development by driving DNA replication, cellular senescence, and metabolic processes. CONCLUSION: The ORC, especially ORC1/6, has important prognostic and expression significance for LUAD patients. |
format | Online Article Text |
id | pubmed-9972100 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-99721002023-03-01 Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance Tang, Min Chen, Juan Zeng, Tian Ye, Dong‐mei Li, Yu‐kun Zou, Juan Zhang, Yu‐ping Cancer Med Research Articles BACKGROUND: DNA replication alteration is a hallmark of patients with lung adenocarcinoma (LUAD) and is frequently observed in LUAD progression. Origin recognition complex (ORC) 1, ORC2, ORC3, ORC4, ORC5, and ORC6 form a replication–initiator complex to mediate DNA replication, which plays a key role in carcinogenesis, while their roles in LUAD remain poorly understood. METHODS: The mRNA and protein expression of ORCs was confirmed by the GEPIA, HPA, CPTAC, and TCGA databases. The protein–protein interaction network was analyzed by the GeneMANIA database. Functional enrichment was confirmed by the Metascape database. The effects of ORCs on immune infiltration were validated by the TIMER database. The prognostic significance of ORCs in LUAD was confirmed by the KM‐plot and GENT2 databases. DNA alteration and protein structure were determined in the cBioProtal and PDB databases. Moreover, the protein expression and prognostic value of ORCs were confirmed in our LUAD data sets by immunohistochemistry (IHC) staining. RESULTS: ORC mRNA and protein were significantly increased in patients with LUAD compared with corresponding normal tissue samples. The results of IHC staining analysis were similar result to those of the above bioinformatics analysis. Furthermore, ORC1 and ORC6 had significant prognostic values for LUAD patients. Furthermore, the ORC cooperatively promoted LUAD development by driving DNA replication, cellular senescence, and metabolic processes. CONCLUSION: The ORC, especially ORC1/6, has important prognostic and expression significance for LUAD patients. John Wiley and Sons Inc. 2022-10-07 /pmc/articles/PMC9972100/ /pubmed/36205357 http://dx.doi.org/10.1002/cam4.5238 Text en © 2022 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Tang, Min Chen, Juan Zeng, Tian Ye, Dong‐mei Li, Yu‐kun Zou, Juan Zhang, Yu‐ping Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
title | Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
title_full | Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
title_fullStr | Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
title_full_unstemmed | Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
title_short | Systemic analysis of the DNA replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
title_sort | systemic analysis of the dna replication regulator origin recognition complex in lung adenocarcinomas identifies prognostic and expression significance |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9972100/ https://www.ncbi.nlm.nih.gov/pubmed/36205357 http://dx.doi.org/10.1002/cam4.5238 |
work_keys_str_mv | AT tangmin systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance AT chenjuan systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance AT zengtian systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance AT yedongmei systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance AT liyukun systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance AT zoujuan systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance AT zhangyuping systemicanalysisofthednareplicationregulatororiginrecognitioncomplexinlungadenocarcinomasidentifiesprognosticandexpressionsignificance |