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Glioma genetic profiles associated with electrophysiologic hyperexcitability
Distinct genetic alterations determine glioma aggressiveness, however the diversity of somatic mutations contributing to peritumoral hyperexcitability and seizures is uncertain. In a large cohort of patients with sequenced gliomas (n=1716), we used discriminant analysis models to identify somatic mu...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980233/ https://www.ncbi.nlm.nih.gov/pubmed/36865325 http://dx.doi.org/10.1101/2023.02.22.23285841 |
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author | Tobochnik, Steven Dorotan, Maria Kristina C. Ghosh, Hia S. Lapinskas, Emily Vogelzang, Jayne Reardon, David A. Ligon, Keith L. Bi, Wenya Linda Smirnakis, Stelios M. Lee, Jong Woo |
author_facet | Tobochnik, Steven Dorotan, Maria Kristina C. Ghosh, Hia S. Lapinskas, Emily Vogelzang, Jayne Reardon, David A. Ligon, Keith L. Bi, Wenya Linda Smirnakis, Stelios M. Lee, Jong Woo |
author_sort | Tobochnik, Steven |
collection | PubMed |
description | Distinct genetic alterations determine glioma aggressiveness, however the diversity of somatic mutations contributing to peritumoral hyperexcitability and seizures is uncertain. In a large cohort of patients with sequenced gliomas (n=1716), we used discriminant analysis models to identify somatic mutation variants associated with electrographic hyperexcitability in a subset with continuous EEG recording (n=206). Overall tumor mutational burdens were similar between patients with and without hyperexcitability. A cross-validated model trained exclusively on somatic mutations classified the presence or absence of hyperexcitability with an overall accuracy of 70.9%, and improved estimates of hyperexcitability and anti-seizure medication failure in multivariate analysis incorporating traditional demographic factors and tumor molecular classifications. Somatic mutation variants of interest were also over-represented in patients with hyperexcitability compared to internal and external reference cohorts. These findings implicate diverse mutations in cancer genes associated with the development of hyperexcitability and response to treatment. |
format | Online Article Text |
id | pubmed-9980233 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-99802332023-03-03 Glioma genetic profiles associated with electrophysiologic hyperexcitability Tobochnik, Steven Dorotan, Maria Kristina C. Ghosh, Hia S. Lapinskas, Emily Vogelzang, Jayne Reardon, David A. Ligon, Keith L. Bi, Wenya Linda Smirnakis, Stelios M. Lee, Jong Woo medRxiv Article Distinct genetic alterations determine glioma aggressiveness, however the diversity of somatic mutations contributing to peritumoral hyperexcitability and seizures is uncertain. In a large cohort of patients with sequenced gliomas (n=1716), we used discriminant analysis models to identify somatic mutation variants associated with electrographic hyperexcitability in a subset with continuous EEG recording (n=206). Overall tumor mutational burdens were similar between patients with and without hyperexcitability. A cross-validated model trained exclusively on somatic mutations classified the presence or absence of hyperexcitability with an overall accuracy of 70.9%, and improved estimates of hyperexcitability and anti-seizure medication failure in multivariate analysis incorporating traditional demographic factors and tumor molecular classifications. Somatic mutation variants of interest were also over-represented in patients with hyperexcitability compared to internal and external reference cohorts. These findings implicate diverse mutations in cancer genes associated with the development of hyperexcitability and response to treatment. Cold Spring Harbor Laboratory 2023-02-24 /pmc/articles/PMC9980233/ /pubmed/36865325 http://dx.doi.org/10.1101/2023.02.22.23285841 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Tobochnik, Steven Dorotan, Maria Kristina C. Ghosh, Hia S. Lapinskas, Emily Vogelzang, Jayne Reardon, David A. Ligon, Keith L. Bi, Wenya Linda Smirnakis, Stelios M. Lee, Jong Woo Glioma genetic profiles associated with electrophysiologic hyperexcitability |
title | Glioma genetic profiles associated with electrophysiologic hyperexcitability |
title_full | Glioma genetic profiles associated with electrophysiologic hyperexcitability |
title_fullStr | Glioma genetic profiles associated with electrophysiologic hyperexcitability |
title_full_unstemmed | Glioma genetic profiles associated with electrophysiologic hyperexcitability |
title_short | Glioma genetic profiles associated with electrophysiologic hyperexcitability |
title_sort | glioma genetic profiles associated with electrophysiologic hyperexcitability |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9980233/ https://www.ncbi.nlm.nih.gov/pubmed/36865325 http://dx.doi.org/10.1101/2023.02.22.23285841 |
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