Cargando…
Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder t...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984408/ https://www.ncbi.nlm.nih.gov/pubmed/36869044 http://dx.doi.org/10.1038/s41467-023-36887-1 |
_version_ | 1784900739736272896 |
---|---|
author | Xue, Niannian Liu, Xu Zhang, Dan Wu, Youming Zhong, Yi Wang, Jinxin Fan, Wenjing Jiang, Haixia Zhu, Biyun Ge, Xiyu Gonzalez, Rachel V. L. Chen, Liang Zhang, Shun She, Peilu Zhong, Zhilin Sun, Jianjian Chen, Xi Wang, Liren Gu, Zhimin Zhu, Ping Liu, Mingyao Li, Dali Zhong, Tao P. Zhang, Xiaohui |
author_facet | Xue, Niannian Liu, Xu Zhang, Dan Wu, Youming Zhong, Yi Wang, Jinxin Fan, Wenjing Jiang, Haixia Zhu, Biyun Ge, Xiyu Gonzalez, Rachel V. L. Chen, Liang Zhang, Shun She, Peilu Zhong, Zhilin Sun, Jianjian Chen, Xi Wang, Liren Gu, Zhimin Zhu, Ping Liu, Mingyao Li, Dali Zhong, Tao P. Zhang, Xiaohui |
author_sort | Xue, Niannian |
collection | PubMed |
description | Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder their broad applications. In this study, through fusion of ABE8e with Rad51 DNA-binding domain, we generate a hyperactive ABE (hyABE) which offers improved A-to-G editing efficiency at the region (A(10)-A(15)) proximal to the PAM, with 1.2- to 7-fold improvement compared to ABE8e. Similarly, we develop optimized dual base editors (eA&C-BEmax and hyA&C-BEmax) with markedly improved simultaneous A/C conversion efficiency (1.2-fold and 1.5-fold improvement, respectively) compared to A&C-BEmax in human cells. Moreover, these optimized base editors catalyze efficiently nucleotide conversions in zebrafish embryos to mirror human syndrome or in human cells to potentially treat genetic diseases, indicating their great potential in broad applications for disease modeling and gene therapy. |
format | Online Article Text |
id | pubmed-9984408 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-99844082023-03-05 Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD Xue, Niannian Liu, Xu Zhang, Dan Wu, Youming Zhong, Yi Wang, Jinxin Fan, Wenjing Jiang, Haixia Zhu, Biyun Ge, Xiyu Gonzalez, Rachel V. L. Chen, Liang Zhang, Shun She, Peilu Zhong, Zhilin Sun, Jianjian Chen, Xi Wang, Liren Gu, Zhimin Zhu, Ping Liu, Mingyao Li, Dali Zhong, Tao P. Zhang, Xiaohui Nat Commun Article Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder their broad applications. In this study, through fusion of ABE8e with Rad51 DNA-binding domain, we generate a hyperactive ABE (hyABE) which offers improved A-to-G editing efficiency at the region (A(10)-A(15)) proximal to the PAM, with 1.2- to 7-fold improvement compared to ABE8e. Similarly, we develop optimized dual base editors (eA&C-BEmax and hyA&C-BEmax) with markedly improved simultaneous A/C conversion efficiency (1.2-fold and 1.5-fold improvement, respectively) compared to A&C-BEmax in human cells. Moreover, these optimized base editors catalyze efficiently nucleotide conversions in zebrafish embryos to mirror human syndrome or in human cells to potentially treat genetic diseases, indicating their great potential in broad applications for disease modeling and gene therapy. Nature Publishing Group UK 2023-03-03 /pmc/articles/PMC9984408/ /pubmed/36869044 http://dx.doi.org/10.1038/s41467-023-36887-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Xue, Niannian Liu, Xu Zhang, Dan Wu, Youming Zhong, Yi Wang, Jinxin Fan, Wenjing Jiang, Haixia Zhu, Biyun Ge, Xiyu Gonzalez, Rachel V. L. Chen, Liang Zhang, Shun She, Peilu Zhong, Zhilin Sun, Jianjian Chen, Xi Wang, Liren Gu, Zhimin Zhu, Ping Liu, Mingyao Li, Dali Zhong, Tao P. Zhang, Xiaohui Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD |
title | Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD |
title_full | Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD |
title_fullStr | Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD |
title_full_unstemmed | Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD |
title_short | Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD |
title_sort | improving adenine and dual base editors through introduction of tada-8e and rad51dbd |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984408/ https://www.ncbi.nlm.nih.gov/pubmed/36869044 http://dx.doi.org/10.1038/s41467-023-36887-1 |
work_keys_str_mv | AT xueniannian improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT liuxu improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhangdan improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT wuyouming improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhongyi improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT wangjinxin improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT fanwenjing improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT jianghaixia improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhubiyun improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT gexiyu improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT gonzalezrachelvl improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT chenliang improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhangshun improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT shepeilu improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhongzhilin improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT sunjianjian improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT chenxi improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT wangliren improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT guzhimin improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhuping improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT liumingyao improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT lidali improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhongtaop improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd AT zhangxiaohui improvingadenineanddualbaseeditorsthroughintroductionoftada8eandrad51dbd |