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Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD

Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder t...

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Autores principales: Xue, Niannian, Liu, Xu, Zhang, Dan, Wu, Youming, Zhong, Yi, Wang, Jinxin, Fan, Wenjing, Jiang, Haixia, Zhu, Biyun, Ge, Xiyu, Gonzalez, Rachel V. L., Chen, Liang, Zhang, Shun, She, Peilu, Zhong, Zhilin, Sun, Jianjian, Chen, Xi, Wang, Liren, Gu, Zhimin, Zhu, Ping, Liu, Mingyao, Li, Dali, Zhong, Tao P., Zhang, Xiaohui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984408/
https://www.ncbi.nlm.nih.gov/pubmed/36869044
http://dx.doi.org/10.1038/s41467-023-36887-1
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author Xue, Niannian
Liu, Xu
Zhang, Dan
Wu, Youming
Zhong, Yi
Wang, Jinxin
Fan, Wenjing
Jiang, Haixia
Zhu, Biyun
Ge, Xiyu
Gonzalez, Rachel V. L.
Chen, Liang
Zhang, Shun
She, Peilu
Zhong, Zhilin
Sun, Jianjian
Chen, Xi
Wang, Liren
Gu, Zhimin
Zhu, Ping
Liu, Mingyao
Li, Dali
Zhong, Tao P.
Zhang, Xiaohui
author_facet Xue, Niannian
Liu, Xu
Zhang, Dan
Wu, Youming
Zhong, Yi
Wang, Jinxin
Fan, Wenjing
Jiang, Haixia
Zhu, Biyun
Ge, Xiyu
Gonzalez, Rachel V. L.
Chen, Liang
Zhang, Shun
She, Peilu
Zhong, Zhilin
Sun, Jianjian
Chen, Xi
Wang, Liren
Gu, Zhimin
Zhu, Ping
Liu, Mingyao
Li, Dali
Zhong, Tao P.
Zhang, Xiaohui
author_sort Xue, Niannian
collection PubMed
description Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder their broad applications. In this study, through fusion of ABE8e with Rad51 DNA-binding domain, we generate a hyperactive ABE (hyABE) which offers improved A-to-G editing efficiency at the region (A(10)-A(15)) proximal to the PAM, with 1.2- to 7-fold improvement compared to ABE8e. Similarly, we develop optimized dual base editors (eA&C-BEmax and hyA&C-BEmax) with markedly improved simultaneous A/C conversion efficiency (1.2-fold and 1.5-fold improvement, respectively) compared to A&C-BEmax in human cells. Moreover, these optimized base editors catalyze efficiently nucleotide conversions in zebrafish embryos to mirror human syndrome or in human cells to potentially treat genetic diseases, indicating their great potential in broad applications for disease modeling and gene therapy.
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spelling pubmed-99844082023-03-05 Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD Xue, Niannian Liu, Xu Zhang, Dan Wu, Youming Zhong, Yi Wang, Jinxin Fan, Wenjing Jiang, Haixia Zhu, Biyun Ge, Xiyu Gonzalez, Rachel V. L. Chen, Liang Zhang, Shun She, Peilu Zhong, Zhilin Sun, Jianjian Chen, Xi Wang, Liren Gu, Zhimin Zhu, Ping Liu, Mingyao Li, Dali Zhong, Tao P. Zhang, Xiaohui Nat Commun Article Base editors, including dual base editors, are innovative techniques for efficient base conversions in genomic DNA. However, the low efficiency of A-to-G base conversion at positions proximal to the protospacer adjacent motif (PAM) and the A/C simultaneous conversion of the dual base editor hinder their broad applications. In this study, through fusion of ABE8e with Rad51 DNA-binding domain, we generate a hyperactive ABE (hyABE) which offers improved A-to-G editing efficiency at the region (A(10)-A(15)) proximal to the PAM, with 1.2- to 7-fold improvement compared to ABE8e. Similarly, we develop optimized dual base editors (eA&C-BEmax and hyA&C-BEmax) with markedly improved simultaneous A/C conversion efficiency (1.2-fold and 1.5-fold improvement, respectively) compared to A&C-BEmax in human cells. Moreover, these optimized base editors catalyze efficiently nucleotide conversions in zebrafish embryos to mirror human syndrome or in human cells to potentially treat genetic diseases, indicating their great potential in broad applications for disease modeling and gene therapy. Nature Publishing Group UK 2023-03-03 /pmc/articles/PMC9984408/ /pubmed/36869044 http://dx.doi.org/10.1038/s41467-023-36887-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Xue, Niannian
Liu, Xu
Zhang, Dan
Wu, Youming
Zhong, Yi
Wang, Jinxin
Fan, Wenjing
Jiang, Haixia
Zhu, Biyun
Ge, Xiyu
Gonzalez, Rachel V. L.
Chen, Liang
Zhang, Shun
She, Peilu
Zhong, Zhilin
Sun, Jianjian
Chen, Xi
Wang, Liren
Gu, Zhimin
Zhu, Ping
Liu, Mingyao
Li, Dali
Zhong, Tao P.
Zhang, Xiaohui
Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
title Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
title_full Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
title_fullStr Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
title_full_unstemmed Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
title_short Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD
title_sort improving adenine and dual base editors through introduction of tada-8e and rad51dbd
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9984408/
https://www.ncbi.nlm.nih.gov/pubmed/36869044
http://dx.doi.org/10.1038/s41467-023-36887-1
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