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Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
BACKGROUND: Cardiomyocytes derived from human iPS cells (hiPSCs) include cells showing SAN‐ and non‐SAN‐type spontaneous APs. OBJECTIVES: To examine whether the deep learning technology could identify hiPSC‐derived SAN‐like cells showing SAN‐type‐APs by their shape. METHODS: We acquired phase‐contra...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407170/ https://www.ncbi.nlm.nih.gov/pubmed/37560272 http://dx.doi.org/10.1002/joa3.12883 |
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author | Wakimizu, Takayuki Naito, Junpei Ishida, Manabu Kurata, Yasutaka Tsuneto, Motokazu Shirayoshi, Yasuaki Hisatome, Ichiro |
author_facet | Wakimizu, Takayuki Naito, Junpei Ishida, Manabu Kurata, Yasutaka Tsuneto, Motokazu Shirayoshi, Yasuaki Hisatome, Ichiro |
author_sort | Wakimizu, Takayuki |
collection | PubMed |
description | BACKGROUND: Cardiomyocytes derived from human iPS cells (hiPSCs) include cells showing SAN‐ and non‐SAN‐type spontaneous APs. OBJECTIVES: To examine whether the deep learning technology could identify hiPSC‐derived SAN‐like cells showing SAN‐type‐APs by their shape. METHODS: We acquired phase‐contrast images for hiPSC‐derived SHOX2/HCN4 double‐positive SAN‐like and non‐SAN‐like cells and made a VGG16‐based CNN model to classify an input image as SAN‐like or non‐SAN‐like cell, compared to human discriminability. RESULTS: All parameter values such as accuracy, recall, specificity, and precision obtained from the trained CNN model were higher than those of human classification. CONCLUSIONS: Deep learning technology could identify hiPSC‐derived SAN‐like cells with considerable accuracy. |
format | Online Article Text |
id | pubmed-10407170 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104071702023-08-09 Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells Wakimizu, Takayuki Naito, Junpei Ishida, Manabu Kurata, Yasutaka Tsuneto, Motokazu Shirayoshi, Yasuaki Hisatome, Ichiro J Arrhythm Rapid Communication BACKGROUND: Cardiomyocytes derived from human iPS cells (hiPSCs) include cells showing SAN‐ and non‐SAN‐type spontaneous APs. OBJECTIVES: To examine whether the deep learning technology could identify hiPSC‐derived SAN‐like cells showing SAN‐type‐APs by their shape. METHODS: We acquired phase‐contrast images for hiPSC‐derived SHOX2/HCN4 double‐positive SAN‐like and non‐SAN‐like cells and made a VGG16‐based CNN model to classify an input image as SAN‐like or non‐SAN‐like cell, compared to human discriminability. RESULTS: All parameter values such as accuracy, recall, specificity, and precision obtained from the trained CNN model were higher than those of human classification. CONCLUSIONS: Deep learning technology could identify hiPSC‐derived SAN‐like cells with considerable accuracy. John Wiley and Sons Inc. 2023-06-16 /pmc/articles/PMC10407170/ /pubmed/37560272 http://dx.doi.org/10.1002/joa3.12883 Text en © 2023 The Authors. Journal of Arrhythmia published by John Wiley & Sons Australia, Ltd on behalf of Japanese Heart Rhythm Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Rapid Communication Wakimizu, Takayuki Naito, Junpei Ishida, Manabu Kurata, Yasutaka Tsuneto, Motokazu Shirayoshi, Yasuaki Hisatome, Ichiro Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells |
title | Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells |
title_full | Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells |
title_fullStr | Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells |
title_full_unstemmed | Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells |
title_short | Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells |
title_sort | deep learning‐based identification of sinoatrial node‐like pacemaker cells from shox2/hcn4 double‐positive cells differentiated from human ips cells |
topic | Rapid Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407170/ https://www.ncbi.nlm.nih.gov/pubmed/37560272 http://dx.doi.org/10.1002/joa3.12883 |
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