Cargando…

Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells

BACKGROUND: Cardiomyocytes derived from human iPS cells (hiPSCs) include cells showing SAN‐ and non‐SAN‐type spontaneous APs. OBJECTIVES: To examine whether the deep learning technology could identify hiPSC‐derived SAN‐like cells showing SAN‐type‐APs by their shape. METHODS: We acquired phase‐contra...

Descripción completa

Detalles Bibliográficos
Autores principales: Wakimizu, Takayuki, Naito, Junpei, Ishida, Manabu, Kurata, Yasutaka, Tsuneto, Motokazu, Shirayoshi, Yasuaki, Hisatome, Ichiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407170/
https://www.ncbi.nlm.nih.gov/pubmed/37560272
http://dx.doi.org/10.1002/joa3.12883
_version_ 1785085896981217280
author Wakimizu, Takayuki
Naito, Junpei
Ishida, Manabu
Kurata, Yasutaka
Tsuneto, Motokazu
Shirayoshi, Yasuaki
Hisatome, Ichiro
author_facet Wakimizu, Takayuki
Naito, Junpei
Ishida, Manabu
Kurata, Yasutaka
Tsuneto, Motokazu
Shirayoshi, Yasuaki
Hisatome, Ichiro
author_sort Wakimizu, Takayuki
collection PubMed
description BACKGROUND: Cardiomyocytes derived from human iPS cells (hiPSCs) include cells showing SAN‐ and non‐SAN‐type spontaneous APs. OBJECTIVES: To examine whether the deep learning technology could identify hiPSC‐derived SAN‐like cells showing SAN‐type‐APs by their shape. METHODS: We acquired phase‐contrast images for hiPSC‐derived SHOX2/HCN4 double‐positive SAN‐like and non‐SAN‐like cells and made a VGG16‐based CNN model to classify an input image as SAN‐like or non‐SAN‐like cell, compared to human discriminability. RESULTS: All parameter values such as accuracy, recall, specificity, and precision obtained from the trained CNN model were higher than those of human classification. CONCLUSIONS: Deep learning technology could identify hiPSC‐derived SAN‐like cells with considerable accuracy.
format Online
Article
Text
id pubmed-10407170
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-104071702023-08-09 Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells Wakimizu, Takayuki Naito, Junpei Ishida, Manabu Kurata, Yasutaka Tsuneto, Motokazu Shirayoshi, Yasuaki Hisatome, Ichiro J Arrhythm Rapid Communication BACKGROUND: Cardiomyocytes derived from human iPS cells (hiPSCs) include cells showing SAN‐ and non‐SAN‐type spontaneous APs. OBJECTIVES: To examine whether the deep learning technology could identify hiPSC‐derived SAN‐like cells showing SAN‐type‐APs by their shape. METHODS: We acquired phase‐contrast images for hiPSC‐derived SHOX2/HCN4 double‐positive SAN‐like and non‐SAN‐like cells and made a VGG16‐based CNN model to classify an input image as SAN‐like or non‐SAN‐like cell, compared to human discriminability. RESULTS: All parameter values such as accuracy, recall, specificity, and precision obtained from the trained CNN model were higher than those of human classification. CONCLUSIONS: Deep learning technology could identify hiPSC‐derived SAN‐like cells with considerable accuracy. John Wiley and Sons Inc. 2023-06-16 /pmc/articles/PMC10407170/ /pubmed/37560272 http://dx.doi.org/10.1002/joa3.12883 Text en © 2023 The Authors. Journal of Arrhythmia published by John Wiley & Sons Australia, Ltd on behalf of Japanese Heart Rhythm Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Rapid Communication
Wakimizu, Takayuki
Naito, Junpei
Ishida, Manabu
Kurata, Yasutaka
Tsuneto, Motokazu
Shirayoshi, Yasuaki
Hisatome, Ichiro
Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
title Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
title_full Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
title_fullStr Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
title_full_unstemmed Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
title_short Deep learning‐based identification of sinoatrial node‐like pacemaker cells from SHOX2/HCN4 double‐positive cells differentiated from human iPS cells
title_sort deep learning‐based identification of sinoatrial node‐like pacemaker cells from shox2/hcn4 double‐positive cells differentiated from human ips cells
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407170/
https://www.ncbi.nlm.nih.gov/pubmed/37560272
http://dx.doi.org/10.1002/joa3.12883
work_keys_str_mv AT wakimizutakayuki deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells
AT naitojunpei deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells
AT ishidamanabu deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells
AT kuratayasutaka deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells
AT tsunetomotokazu deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells
AT shirayoshiyasuaki deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells
AT hisatomeichiro deeplearningbasedidentificationofsinoatrialnodelikepacemakercellsfromshox2hcn4doublepositivecellsdifferentiatedfromhumanipscells