Cargando…

EnrichNet: network-based gene set enrichment analysis

Motivation: Assessing functional associations between an experimentally derived gene or protein set of interest and a database of known gene/protein sets is a common task in the analysis of large-scale functional genomics data. For this purpose, a frequently used approach is to apply an over-represe...

Descripción completa

Detalles Bibliográficos
Autores principales:	Glaab, Enrico, Baudot, Anaïs, Krasnogor, Natalio, Schneider, Reinhard, Valencia, Alfonso
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Original Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436816/ https://www.ncbi.nlm.nih.gov/pubmed/22962466 http://dx.doi.org/10.1093/bioinformatics/bts389

Ejemplares similares

TopoGSA: network topological gene set analysis
por: Glaab, Enrico, et al.
Publicado: (2010)

Extending pathways and processes using molecular interaction networks to analyse cancer genome data
por: Glaab, Enrico, et al.
Publicado: (2010)

JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks
por: Winterhalter, Charles, et al.
Publicado: (2014)

Using Rule-Based Machine Learning for Candidate Disease Gene Prioritization and Sample Classification of Cancer Gene Expression Data
por: Glaab, Enrico, et al.
Publicado: (2012)

ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization
por: Glaab, Enrico, et al.
Publicado: (2009)

Network enrichment analysis: extension of gene-set enrichment analysis to gene networks
por: Alexeyenko, Andrey, et al.
Publicado: (2012)

EviNet: a web platform for network enrichment analysis with flexible definition of gene sets
por: Jeggari, Ashwini, et al.
Publicado: (2018)

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
por: Merico, Daniele, et al.
Publicado: (2010)

FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis
por: Zhang, Yun, et al.
Publicado: (2017)

Enhancing gene set enrichment using networks
por: Prummer, Michael
Publicado: (2019)

NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis
por: Sun, Duanchen, et al.
Publicado: (2017)

Absolute enrichment: gene set enrichment analysis for homeostatic systems
por: Saxena, Vishal, et al.
Publicado: (2006)

orsum: a Python package for filtering and comparing enrichment analyses using a simple principle
por: Ozisik, Ozan, et al.
Publicado: (2022)

NIHBA: a network interdiction approach for metabolic engineering design
por: Jiang, Shouyong, et al.
Publicado: (2020)

FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets
por: Tiys, Evgeny S., et al.
Publicado: (2018)

Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions
por: Lee, Christopher T, et al.
Publicado: (2020)

Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis
por: Tran, Van Du T, et al.
Publicado: (2019)

Predicting species emergence in simulated complex pre-biotic networks
por: Markovitch, Omer, et al.
Publicado: (2018)

Spectral gene set enrichment (SGSE)
por: Frost, H Robert, et al.
Publicado: (2015)

Translational disease interpretation with molecular networks
por: Baudot, Anaïs, et al.
Publicado: (2009)

Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis
por: Geistlinger, Ludwig, et al.
Publicado: (2016)

Gene Set Enrichment Analysis of Interaction Networks Weighted by Node Centrality
por: Zito, Alessandra, et al.
Publicado: (2021)

ChIP-Enrich: gene set enrichment testing for ChIP-seq data
por: Welch, Ryan P., et al.
Publicado: (2014)

PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data
por: Glaab, Enrico, et al.
Publicado: (2012)

NGSEA: Network-Based Gene Set Enrichment Analysis for Interpreting Gene Expression Phenotypes with Functional Gene Sets
por: Han, Heonjong, et al.
Publicado: (2019)

Population Dynamics of Autocatalytic Sets in a Compartmentalized Spatial World
por: Hordijk, Wim, et al.
Publicado: (2018)

PAGE: Parametric Analysis of Gene Set Enrichment
por: Kim, Seon-Young, et al.
Publicado: (2005)

TAFFEL: Independent Enrichment Analysis of gene sets
por: Kurki, Mitja I, et al.
Publicado: (2011)

Comparative study of gene set enrichment methods
por: Abatangelo, Luca, et al.
Publicado: (2009)

Weighted set enrichment of gene expression data
por: Qureshi, Rehman, et al.
Publicado: (2013)

Principal component gene set enrichment (PCGSE)
por: Frost, H. Robert, et al.
Publicado: (2015)

Improving the power of gene set enrichment analyses
por: Roder, Joanna, et al.
Publicado: (2019)

Gene-set Enrichment with Mathematical Biology (GEMB)
por: Cochran, Amy L, et al.
Publicado: (2020)

GeneTrail—advanced gene set enrichment analysis
por: Backes, Christina, et al.
Publicado: (2007)

Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes
por: Kurokawa, Ken, et al.
Publicado: (2007)

Combining multiple tools outperforms individual methods in gene set enrichment analyses
por: Alhamdoosh, Monther, et al.
Publicado: (2017)

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms
por: Zyla, Joanna, et al.
Publicado: (2019)

Enrichment of Patients With Ehlers Danlos Syndrome in Idiopathic Gastroparesis—A Gene Set Enrichment Analysis
por: Smieszek, Sandra P., et al.
Publicado: (2022)

Predictive and interpretable models via the stacked elastic net
por: Rauschenberger, Armin, et al.
Publicado: (2020)

Avoiding the pitfalls of gene set enrichment analysis with SetRank
por: Simillion, Cedric, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_l6hufc733f4ge598nlchg8jfc1